RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA515078" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA515078 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10690567 10690567 PRJNA515078_P_NODE_16609_length_214_cov_1.322034_g16376_i0 PRJNA515078 16609 214 1.322034 2.82915276 root 1 Root_unresolved Root_unresolved 91.3 4.860000000000001e-21   NR XP_001579633.1 412133 g16376 i0 75 8.81775700934579 56 14 78.5 0 212 45 129 184 XP_001579633.1 peptidyl-prolyl cis-trans isomerase protein [Trichomonas vaginalis G3] diamond 1887 91.7 0.995637949836423 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
11965595 11965595 PRJNA515078_P_NODE_25710_length_171_cov_1.828358_g25477_i0 PRJNA515078 25710 171 1.828358 3.12649218 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 74.3 3.23e-15   NR XP_068349968.1 1144522 g25477 i0 70.5 2.96491228070175 44 13 77.2 0 169 38 67 110 XP_068349968.1 NHP2-like protein 1 [Tritrichomonas foetus] diamond 507 74.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
12589894 12589894 PRJNA515078_P_NODE_23910_length_177_cov_2.228571_g23677_i0 PRJNA515078 23910 177 2.228571 3.94457067 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 8.69e-25   NTclustered gi|2587729139|gb|OR478975.1| 56777 g23677 i0 81.29 29.5819209039548 155 29 88 0 16 170 773 619 Trichomonas gallinae elongation factor 1 alpha (EF1A) mRNA, complete cds blastn 5236 126 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas gallinae
19612831 19612831 PRJNA515078_P_NODE_16256_length_216_cov_1.960894_g16023_i0 PRJNA515078 16256 216 1.960894 4.23553104 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.001   NTclustered gi|2806440984|ref|XM_068497330.1| 1144522 g16023 i0 100 0.138888888888889 30 0 14 0 177 206 242 213 Tritrichomonas foetus uncharacterized protein (TRFO_13569), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26776238 26776238 PRJNA515078_P_NODE_11401_length_265_cov_1.710526_g11168_i0 PRJNA515078 11401 265 1.710526 4.5328939 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 76.3 7.5e-15   NR XP_067773256.1 135588 g11168 i0 42.5 1.94716981132075 87 47 98.5 1 3 263 64 147 XP_067773256.1 Ras-related protein Rab-13 [Histomonas meleagridis] diamond 516 76.6 0.996083550913838 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26982261 26982261 PRJNA515078_P_NODE_27762_length_165_cov_1.539062_g27529_i0 PRJNA515078 27762 165 1.539062 2.5394523 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 79 2.02e-15   NR XP_001329670.1 412133 g27529 i0 63 0.981818181818182 54 20 98.2 0 164 3 256 309 XP_001329670.1 zinc finger protein ZPR1 family [Trichomonas vaginalis G3] diamond 162 79 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27108591 27108591 PRJNA515078_P_NODE_33682_length_152_cov_1.017391_g33449_i0 PRJNA515078 33682 152 1.017391 1.54643432 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.4 4.25e-6   NR XP_067773710.1 135588 g33449 i0 51 3.86842105263158 49 24 96.7 0 149 3 1004 1052 XP_067773710.1 putative alpha-actinin [Histomonas meleagridis] diamond 588 52.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27408894 27408894 PRJNA515078_P_NODE_24943_length_174_cov_1.138686_g24710_i0 PRJNA515078 24943 174 1.138686 1.98131364 root 1 Root_unresolved Root_unresolved 48.5 8.88e-5   NR XP_001310136.1 412133 g24710 i0 42.1 3.25862068965517 57 33 98.3 0 174 4 78 134 XP_001310136.1 small Rab GTPase RabA2 [Trichomonas vaginalis G3] diamond 567 48.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27772374 27772374 PRJNA515078_P_NODE_31304_length_157_cov_0.975000_g31071_i0 PRJNA515078 31304 157 0.975 1.53075 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 46.2 4.38e-4   NR XP_001310100.1 412133 g31071 i0 61.3 6.51592356687898 31 12 59.2 0 119 27 30 60 XP_001310100.1 ankyrin repeat protein family [Trichomonas vaginalis G3] diamond 1023 46.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28671719 28671719 PRJNA515078_P_NODE_29207_length_161_cov_1.887097_g28974_i0 PRJNA515078 29207 161 1.887097 3.03822617 root 1 Root_unresolved Root_unresolved 60.5 9.69e-10   NR XP_001317004.1 412133 g28974 i0 80.6 2.36645962732919 31 6 57.8 0 6 98 114 144 XP_001317004.1 Chain X 40s Ribosomal Protein S23 [Trichomonas vaginalis G3] diamond 381 60.8 0.995065789473684 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29824282 29824282 PRJNA515078_P_NODE_19051_length_199_cov_1.203704_g18818_i0 PRJNA515078 19051 199 1.203704 2.39537096 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 79.7 1.25e-15   NR XP_001327672.1 412133 g18818 i0 53.8 1.95979899497487 65 30 98 0 1 195 193 257 XP_001327672.1 STKc CK1 domain-containing protein [Trichomonas vaginalis G3] diamond 390 79.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31973759 31973759 PRJNA515078_P_NODE_27278_length_167_cov_0.900000_g27045_i0 PRJNA515078 27278 167 0.9 1.503 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 44.7 0.00281   NR XP_068354914.1 1144522 g27045 i0 38.2 0.988023952095808 55 34 98.8 0 166 2 94 148 XP_068354914.1 Protein SEY1 3 [Tritrichomonas foetus] diamond 165 44.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;