RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA515078", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA515078 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28955971 28955971 PRJNA515078_P_NODE_23948_length_177_cov_1.764286_g23715_i0 PRJNA515078 23948 177 1.764286 3.12278622 Methanobacteriati 3366610 Archaea Archaea 62.4 1.82e-9   NR OIR20009.1 1889001 g23715 i0 50 1.64406779661017 48 24 81.4 0 31 174 5 52 OIR20009.1 MAG: hypothetical protein BEU04_04135 [Marine Group III euryarchaeote CG-Bathy1] diamond 291 62.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Candidatus Thermoprofundales     Marine Group III euryarchaeote CG-Bathy1
32052436 32052436 PRJNA515078_P_NODE_9958_length_287_cov_1.544000_g9725_i0 PRJNA515078 9958 287 1.544 4.43128 root 1 Root_unresolved Root_unresolved 81.6 8.52e-16   NR EQB72821.1 667135 g9725 i0 60.3 19.4634146341463 68 24 71.1 1 204 1 3 67 EQB72821.1 MAG: hypothetical protein AMDU1_APLC00001G0001 [Thermoplasmatales archaeon A-plasma] diamond 5586 82.4 0.990291262135922 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon A-plasma

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;