RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA515078", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA515078 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30471837 30471837 PRJNA515078_P_NODE_14353_length_232_cov_1.589744_g14120_i0 PRJNA515078 14353 232 1.589744 3.68820608 FCB group 1783270 Bacteria Bacteria 55.8 2.29e-7   NR WP_008826111.1 471825 g14120 i0 71.9 6.9698275862069 32 9 41.4 0 101 6 2 33 WP_008826111.1 shikimate kinase [Haloplasma contractile] diamond 1617 55.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae Haloplasma Haloplasma contractile
31404526 31404526 PRJNA515078_P_NODE_18116_length_204_cov_2.101796_g17883_i0 PRJNA515078 18116 204 2.101796 4.28766384 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 40.4 0.03   NR WP_187150452.1 432608 g17883 i0 41 0.897058823529412 61 35 89.7 1 198 16 4 63 WP_187150452.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 183 40.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;