RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA515078", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 19 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 19 ✖

bioproject 1

  • PRJNA515078 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10690584 10690584 PRJNA515078_P_NODE_18369_length_203_cov_0.939759_g18136_i0 PRJNA515078 18369 203 0.939759 1.90771077 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 104 3.13e-24   NR NBD37350.1 2026799 g18136 i0 73.1 1.98029556650246 67 18 99 0 3 203 26 92 NBD37350.1 molecular chaperone HtpG [Verrucomicrobiota bacterium] diamond 402 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
14515896 14515896 PRJNA515078_P_NODE_8112_length_322_cov_2.280702_g7879_i0 PRJNA515078 8112 322 2.280702 7.34386044 Luteolibacter luteus 2728835 Bacteria Bacteria 54.7 0.008   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g7879 i0 100 0.0900621118012422 29 0 9 0 241 269 1840248 1840220 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
24712819 24712819 PRJNA515078_P_NODE_10580_length_277_cov_1.300000_g10347_i0 PRJNA515078 10580 277 1.3 3.601 Fontisphaera persica 2974023 Bacteria Bacteria 230 1.1e-55   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g10347 i0 82.482 105.335740072202 274 36 96 8 1 265 3861307 3861037 Fontisphaera persica strain B-154 chromosome, complete genome blastn 29178 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
26824174 26824174 PRJNA515078_P_NODE_6901_length_356_cov_1.360502_g6668_i0 PRJNA515078 6901 356 1.360502 4.84338712 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 2.01e-11   NR RYD71398.1 2026800 g6668 i0 38.7 0.935393258426966 111 57 89.3 5 22 339 149 253 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 333 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26919019 26919019 PRJNA515078_P_NODE_482_length_1302_cov_6.989723_g409_i0 PRJNA515078 482 1302 6.989723 91.00619346 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 414 3.64e-140   NR RYD65414.1 2026800 g409 i0 67.9 0.688940092165899 299 90 68.9 2 246 1142 43 335 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 897 414 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27330153 27330153 PRJNA515078_P_NODE_11543_length_263_cov_1.517699_g11310_i0 PRJNA515078 11543 263 1.517699 3.99154837 Prosthecobacter sp. 1965333 Bacteria Bacteria 43.5 0.0255   NR HEY1083865.1 1965333 g11310 i0 36.2 0.787072243346008 69 42 76.4 1 3 203 324 392 HEY1083865.1 tetratricopeptide repeat protein [Prosthecobacter sp.] diamond 207 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
27582623 27582623 PRJNA515078_P_NODE_29064_length_162_cov_1.112000_g28831_i0 PRJNA515078 29064 162 1.112 1.80144 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.2 3.79e-9   NR RFC52718.1 2026799 g28831 i0 57.4 1 54 22 98.1 1 162 4 646 699 RFC52718.1 MAG: F5/8 type C domain-containing protein/F5/8 type C domain-containing protein [Verrucomicrobiota bacterium] diamond 162 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27819299 27819299 PRJNA515078_P_NODE_12604_length_250_cov_1.798122_g12371_i0 PRJNA515078 12604 250 1.798122 4.495305 PVC group 1783257 Bacteria Bacteria 121 2.18e-31   NR MBR4107997.1 1872421 g12371 i0 66.3 31.872 83 28 99.6 0 1 249 176 258 MBR4107997.1 elongation factor Tu [Akkermansia sp.] diamond 7968 122 0.991803278688525 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
28024827 28024827 PRJNA515078_P_NODE_5725_length_395_cov_2.321229_g5492_i0 PRJNA515078 5725 395 2.321229 9.16885455 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 72 8.65e-12   NR RYD71398.1 2026800 g5492 i0 40.4 3.06835443037975 109 50 73.7 5 390 100 185 290 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 1212 72 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28308978 28308978 PRJNA515078_P_NODE_28566_length_163_cov_1.238095_g28333_i0 PRJNA515078 28566 163 1.238095 2.01809485 Luteolibacter luteus 2728835 Bacteria Bacteria 68.2 1.36e-11   NR WP_169453120.1 2728835 g28333 i0 49.1 0.975460122699387 53 27 97.5 0 5 163 100 152 WP_169453120.1 lectin-like domain-containing protein [Luteolibacter luteus] diamond 159 68.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
28466906 28466906 PRJNA515078_P_NODE_18026_length_205_cov_1.392857_g17793_i0 PRJNA515078 18026 205 1.392857 2.85535685 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 3.77e-12   NR RYD77031.1 2026800 g17793 i0 76.7 1.85853658536585 43 10 62.9 0 133 5 253 295 RYD77031.1 MAG: hypothetical protein EOP84_16100, partial [Verrucomicrobiaceae bacterium] diamond 381 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28782345 28782345 PRJNA515078_P_NODE_34067_length_151_cov_1.087719_g33834_i0 PRJNA515078 34067 151 1.087719 1.64245569 Prosthecobacter sp. 1965333 Bacteria Bacteria 50.1 2.67e-5   NR WP_294231434.1 1965333 g33834 i0 58.7 0.913907284768212 46 19 91.4 0 149 12 2103 2148 WP_294231434.1 Calx-beta domain-containing protein [Prosthecobacter sp.] diamond 138 50.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
28908501 28908501 PRJNA515078_P_NODE_18528_length_202_cov_0.945455_g18295_i0 PRJNA515078 18528 202 0.945455 1.9098191 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 54.3 1.84e-6   NR MFT6181639.1 2562705 g18295 i0 39.3 1.66336633663366 56 34 83.2 0 34 201 178 233 MFT6181639.1 serine/threonine protein kinase [Akkermansiaceae bacterium] diamond 336 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
29839832 29839832 PRJNA515078_P_NODE_34291_length_150_cov_2.070796_g34058_i0 PRJNA515078 34291 150 2.070796 3.106194 Pseudomonadati 3379134 Bacteria Bacteria 73.9 1.01e-13   NR MBL63421.1 2026771 g34058 i0 78 4.42 41 9 82 0 125 3 2072 2112 MBL63421.1 hypothetical protein [Opitutia bacterium] diamond 663 74.3 0.994616419919246 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
31309445 31309445 PRJNA515078_P_NODE_735_length_1107_cov_2.287850_g636_i0 PRJNA515078 735 1107 2.28785 25.3264995 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 401 3.6e-136   NR RYD65414.1 2026800 g636 i0 70.9 0.764227642276423 282 79 76.2 2 223 1065 56 335 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 846 401 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31562787 31562787 PRJNA515078_P_NODE_27836_length_165_cov_1.218750_g27603_i0 PRJNA515078 27836 165 1.21875 2.0109375 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 97.1 4.11e-24   NR RYD67074.1 2026800 g27603 i0 88.7 0.963636363636364 53 5 94.5 1 3 158 32 84 RYD67074.1 MAG: J domain-containing protein, partial [Verrucomicrobiaceae bacterium] diamond 159 97.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31941934 31941934 PRJNA515078_P_NODE_12297_length_254_cov_1.023041_g12064_i0 PRJNA515078 12297 254 1.023041 2.59852414 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 132 1.71e-37   NR RYD73503.1 2026800 g12064 i0 82.1 0.992125984251969 84 15 99.2 0 252 1 64 147 RYD73503.1 MAG: fructose-bisphosphate aldolase class I, partial [Verrucomicrobiaceae bacterium] diamond 252 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32132152 32132152 PRJNA515078_P_NODE_23798_length_178_cov_1.106383_g23565_i0 PRJNA515078 23798 178 1.106383 1.96936174 Opitutia bacterium 2026771 Bacteria Bacteria 45.4 0.00176   NR HAD21876.1 2026771 g23565 i0 55.9 0.573033707865168 34 15 57.3 0 5 106 310 343 HAD21876.1 hypothetical protein [Opitutia bacterium] diamond 102 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
32369102 32369102 PRJNA515078_P_NODE_32139_length_155_cov_1.177966_g31906_i0 PRJNA515078 32139 155 1.177966 1.8258473 Opitutia 414999 Bacteria Bacteria 54.7 6.78e-7   NR WP_068773056.1 1184151 g31906 i0 49 8.67096774193548 51 26 98.7 0 3 155 113 163 WP_068773056.1 insulinase family protein [Termitidicoccus mucosus] diamond 1344 55.1 0.992740471869329 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;