RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA515078", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA515078 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28940602 28940602 PRJNA515078_P_NODE_32688_length_154_cov_1.000000_g32455_i0 PRJNA515078 32688 154 1 1.54 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 92 5.5600000000000006e-21   NR AFX73094.1 1260108 g32455 i0 86.3 1.98701298701299 51 7 99.4 0 153 1 20 70 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 306 92 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
29224793 29224793 PRJNA515078_P_NODE_10469_length_279_cov_1.008264_g10236_i0 PRJNA515078 10469 279 1.008264 2.81305656 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 140 1.31e-40   NR ABD72565.1 5778 g10236 i0 73.3 0.967741935483871 90 24 96.8 0 270 1 7 96 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 270 140 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32416857 32416857 PRJNA515078_P_NODE_11799_length_259_cov_2.157658_g11566_i0 PRJNA515078 11799 259 2.157658 5.58833422 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 67.8 2.83e-11   NR AAY21191.1 5778 g11566 i0 52.1 1.69111969111969 73 35 84.6 0 258 40 174 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 438 67.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;