RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA513467" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA513467 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15789417 15789417 PRJNA513467_S_NODE_6013_length_169_cov_1.772727_g5990_i0 PRJNA513467 6013 169 1.772727 2.99590863 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.31e-15   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g5990 i0 80.159 10.3550295857988 126 25 75 0 8 133 252 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 1750 95.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
26792419 26792419 PRJNA513467_S_NODE_4421_length_189_cov_1.315789_g4398_i0 PRJNA513467 4421 189 1.315789 2.48684121 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 107 3.3100000000000004e-26   NR CAH0521718.1 622444 g4398 i0 91.8 1.93650793650794 61 5 96.8 0 184 2 168 228 CAH0521718.1 unnamed protein product [Peronospora belbahrii] diamond 366 107 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
31150982 31150982 PRJNA513467_S_NODE_2815_length_221_cov_2.043478_g2792_i0 PRJNA513467 2815 221 2.043478 4.51608638 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 85.5 2.82e-18   NR CAH0481068.1 622444 g2792 i0 87.8 0.665158371040724 49 6 66.5 0 220 74 190 238 CAH0481068.1 unnamed protein product [Peronospora belbahrii] diamond 147 85.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
32495566 32495566 PRJNA513467_S_NODE_2399_length_235_cov_2.106061_g2376_i0 PRJNA513467 2399 235 2.106061 4.94924335 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 92.8 7.79e-20   NR KAG7402106.1 109152 g2376 i0 58.3 14.6170212765957 72 30 91.9 0 233 18 620 691 KAG7402106.1 hypothetical protein PHYBOEH_007320 [Phytophthora boehmeriae] diamond 3435 93.2 0.995708154506438 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;