RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA513467" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA513467 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13864675 13864675 PRJNA513467_S_NODE_3651_length_202_cov_1.351515_g3628_i0 PRJNA513467 3651 202 1.351515 2.7300603 Skeletonema 2842 SAR_Eukaryotes SAR_Eukaryotes 135 1.7000000000000002e-27   NTclustered gi|2739942912|dbj|LC814772.1| 267566 g3628 i0 87.826 56.0841584158416 115 14 57 0 1 115 887 1001 Skeletonema dohrnii SD_MZ01 mitochondrial DNA, complete genome blastn 11329 135 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema dohrnii
19612770 19612770 PRJNA513467_S_NODE_8216_length_151_cov_3.745614_g8193_i0 PRJNA513467 8216 151 3.7456140000000002 5.65587714 uncultured diatom 137771 SAR_Eukaryotes SAR_Eukaryotes 255 8.75e-64   NTclustered gi|831437111|gb|KR089971.1| 137771 g8193 i0 97.931 99.0397350993377 145 3 96 0 1 145 21 165 Uncultured diatom clone 108838_JV_L59_13_D4 18S ribosomal RNA gene, partial sequence blastn 14955 255 1 Eukaryota Sar   Bacillariophyta         uncultured diatom

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;