RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA513467", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA513467 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5590464 5590464 PRJNA513467_S_NODE_1345_length_294_cov_1.622568_g1322_i0 PRJNA513467 1345 294 1.622568 4.77034992 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 499 8.099999999999998e-137   NTclustered gi|31789363|gb|AY281352.1| 171953 g1322 i0 97.279 175.081632653061 294 8 100 0 1 294 2134 1841 Uncultured Acidobacteria bacterium clone 23k22 genomic sequence blastn 51474 499 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18338360 18338360 PRJNA513467_S_NODE_5195_length_178_cov_2.134752_g5172_i0 PRJNA513467 5195 178 2.134752 3.79985856 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 248 1.7899999999999997e-61   NTclustered gi|76574288|gb|DQ139436.1| 171953 g5172 i0 93.413 121.589887640449 167 11 94 0 12 178 296 130 Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence blastn 21643 248 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19612757 19612757 PRJNA513467_S_NODE_7356_length_157_cov_1.950000_g7333_i0 PRJNA513467 7356 157 1.95 3.0615 Terriglobus albidus 1592106 Bacteria Bacteria 207 2.61e-49   NTclustered gi|1724546188|gb|CP042806.1| 1592106 g7333 i0 90.446 23.3057324840764 157 15 100 0 1 157 6047309 6047465 Terriglobus albidus strain ORNL chromosome, complete genome blastn 3659 207 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus albidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;