RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA513467", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA513467 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4939156 4939156 PRJNA513467_S_NODE_604_length_404_cov_2.893733_g581_i0 PRJNA513467 604 404 2.893733 11.69068132 Bacteriovorax 146784 Bacteria Bacteria 725 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g581 i0 99.01 291.918316831683 404 4 100 0 1 404 1660836 1660433 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 117935 725 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30835423 30835423 PRJNA513467_S_NODE_2454_length_233_cov_1.750000_g2431_i0 PRJNA513467 2454 233 1.75 4.0775 Peredibacter sp. 2024850 Bacteria Bacteria 130 1.17e-36   NR MBG60767.1 2024850 g2431 i0 95.7 0.901287553648069 70 3 90.1 0 212 3 1 70 MBG60767.1 hypothetical protein [Peredibacter sp.] diamond 210 130 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp.
31688965 31688965 PRJNA513467_S_NODE_2477_length_232_cov_2.615385_g2454_i0 PRJNA513467 2477 232 2.615385 6.0676932 Bacteriovorax stolpii 960 Bacteria Bacteria 96.3 2.75e-24   NR WP_102243941.1 960 g2454 i0 80.3 0.788793103448276 61 12 78.9 0 230 48 6 66 WP_102243941.1 50S ribosomal protein L35 [Bacteriovorax stolpii] diamond 183 96.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;