RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA513467", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA513467 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6214386 6214386 PRJNA513467_S_NODE_8105_length_152_cov_1.539130_g8082_i0 PRJNA513467 8105 152 1.53913 2.3394776 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 276 6.770000000000001e-70   NTclustered gi|114329902|ref|NC_008339.1| 5907 g8082 i0 99.346 102.934210526316 153 0 100 1 1 152 838 990 Tetrahymena pigmentosa mitochondrion, complete genome blastn 15646 276 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pigmentosa
9414840 9414840 PRJNA513467_S_NODE_4588_length_186_cov_1.926174_g4565_i0 PRJNA513467 4588 186 1.926174 3.58268364 Lamtostyla gui 2678605 SAR_Eukaryotes SAR_Eukaryotes 241 3.16e-59   NTclustered gi|1778223994|gb|MN733822.1| 2678605 g4565 i0 89.947 14.0806451612903 189 15 100 4 1 186 4190 4377 Lamtostyla gui isolate LWY2015111409 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2619 241 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Amphisiellidae Lamtostyla Lamtostyla gui
11314076 11314076 PRJNA513467_S_NODE_4169_length_192_cov_31.619355_g4146_i0 PRJNA513467 4169 192 31.619355 60.7091616 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 329 6.82e-86   NTclustered gi|10782|emb|X54004.1| 5908 g4146 i0 97.423 87.875 194 3 100 2 1 192 3153 2960 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 16872 329 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
17688770 17688770 PRJNA513467_S_NODE_3574_length_203_cov_8.150602_g3551_i0 PRJNA513467 3574 203 8.150602 16.54572206 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 353 4.33e-93   NTclustered gi|2624665746|gb|OR878271.1| 210825 g3551 i0 100 91.5566502463054 191 0 94 0 1 191 666 856 Glaucoma scintillans isolate LLH20220320 large subunit ribosomal RNA gene, partial sequence blastn 18586 353 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma scintillans
29319200 29319200 PRJNA513467_S_NODE_6149_length_168_cov_1.190840_g6126_i0 PRJNA513467 6149 168 1.19084 2.0006112 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 79 2.12e-15   NR XP_001010801.1 312017 g6126 i0 61.8 1.91071428571429 55 21 98.2 0 2 166 313 367 XP_001010801.1 FAD-binding containing protein [Tetrahymena thermophila SB210] diamond 321 79 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31372940 31372940 PRJNA513467_S_NODE_3456_length_206_cov_1.337278_g3433_i0 PRJNA513467 3456 206 1.337278 2.75479268 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 51.6 3.3e-6   NR XP_001010221.2 312017 g3433 i0 86.7 0.436893203883495 30 4 43.7 0 2 91 95 124 XP_001010221.2 ribosomal protein L35 [Tetrahymena thermophila SB210] diamond 90 51.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;