RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA513467", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA513467 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15789388 15789388 PRJNA513467_S_NODE_413_length_478_cov_4.605442_g390_i0 PRJNA513467 413 478 4.605442 22.01401276 Cercozoa sp. YPF501 552662 SAR_Eukaryotes SAR_Eukaryotes 303 1.16e-77   NTclustered gi|220983376|dbj|AB453012.1| 552662 g390 i0 78.85 81.9121338912134 487 76 100 17 1 478 2059 1591 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 39154 303 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
19612697 19612697 PRJNA513467_S_NODE_2596_length_228_cov_2.120419_g2573_i0 PRJNA513467 2596 228 2.120419 4.83455532 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 204 5.2999999999999994e-48   NTclustered gi|238617605|gb|FJ973380.1| 45107 g2573 i0 83.043 33.75 230 34 100 5 1 228 1869 1643 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 7695 204 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;