RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA513467", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA513467 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10690421 10690421 PRJNA513467_S_NODE_1169_length_309_cov_2.764706_g1146_i0 PRJNA513467 1169 309 2.764706 8.54294154 Fimicolochytrium jonesii 1396493 Fungi Fungi 151 3.01e-41   NR XP_052930151.1 1396493 g1146 i0 70 2.89320388349515 100 30 97.1 0 5 304 167 266 XP_052930151.1 Dehydroquinate synthase-like protein [Fimicolochytrium jonesii] diamond 894 151 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
32195262 32195262 PRJNA513467_S_NODE_698_length_383_cov_2.566474_g675_i0 PRJNA513467 698 383 2.566474 9.82959542 Podochytrium sp. JEL 2750441 Fungi Fungi 55.8 1.51e-6   NR KAJ3076838.1 2724200 g675 i0 45.3 0.415143603133159 53 25 38.4 1 3 149 88 140 KAJ3076838.1 hypothetical protein HDU98_011699 [Podochytrium sp. JEL0797] diamond 159 55.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Podochytrium Podochytrium sp. JEL0797

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;