RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA513467" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA513467 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4313599 4313599 PRJNA513467_S_NODE_3204_length_211_cov_3.132184_g3181_i0 PRJNA513467 3204 211 3.132184 6.60890824 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 309 9.96e-80   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g3181 i0 93.023 28.6682464454976 215 9 100 6 1 211 688 900 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 6049 309 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
6864399 6864399 PRJNA513467_S_NODE_1666_length_270_cov_8.819742_g1643_i0 PRJNA513467 1666 270 8.819742 23.8133034 Phalansterium filosum 857046 Evosea other_Eukaryota 86.1 2.44e-12   NTclustered gi|300078501|gb|GU001163.1| 857046 g1643 i0 93.103 20.0777777777778 58 4 35 0 1 58 3088 3031 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5421 86.1 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
6864471 6864471 PRJNA513467_S_NODE_6906_length_161_cov_1.524194_g6883_i0 PRJNA513467 6906 161 1.524194 2.45395234 Vannella septentrionalis 197531 Discosea other_Eukaryota 200 4.5099999999999985e-47   NTclustered gi|300078499|gb|GU001161.1| 197531 g6883 i0 89.091 26.1987577639752 165 12 100 4 1 161 1169 1007 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4218 200 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
28750906 28750906 PRJNA513467_S_NODE_5767_length_172_cov_1.444444_g5744_i0 PRJNA513467 5767 172 1.444444 2.48444368 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 100 4.6099999999999997e-23   NR XP_004344010.1 1257118 g5744 i0 81.5 1.81395348837209 54 10 94.2 0 9 170 614 667 XP_004344010.1 prolyl oligopeptidase [Acanthamoeba castellanii str. Neff] diamond 312 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29445338 29445338 PRJNA513467_S_NODE_5950_length_170_cov_1.315789_g5927_i0 PRJNA513467 5950 170 1.315789 2.2368413 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82 6.38e-17   NR PRP80728.1 1890364 g5927 i0 69.6 0.988235294117647 56 17 98.8 0 169 2 237 292 PRP80728.1 ras-related protein Rab-2A [Planoprotostelium fungivorum] diamond 168 82 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29761157 29761157 PRJNA513467_S_NODE_6371_length_166_cov_1.317829_g6348_i0 PRJNA513467 6371 166 1.317829 2.18759614 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 92.4 4.17e-20   NR PRP76139.1 1890364 g6348 i0 78 0.903614457831325 50 11 90.4 0 1 150 382 431 PRP76139.1 aldehyde dehydrogenase [Planoprotostelium fungivorum] diamond 150 92.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;