RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA512489" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA512489 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7488954 7488954 PRJNA512489_S_NODE_1386_length_167_cov_7.903226_g1381_i0 PRJNA512489 1386 167 7.903226 13.19838742 Mesomycoplasma 2923352 Bacteria Bacteria 298 1.63e-76   NTclustered gi|1720621726|gb|CP035041.1| 2100 g1381 i0 98.81 17.497005988024 168 1 100 1 1 167 791567 791400 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2922 298 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
17688745 17688745 PRJNA512489_S_NODE_1434_length_166_cov_3.528455_g1429_i0 PRJNA512489 1434 166 3.528455 5.8572353 Mesomycoplasma 2923352 Bacteria Bacteria 279 5.86e-71   NTclustered gi|1958638505|gb|MW498314.1| 2100 g1429 i0 98.726 93.4578313253012 157 2 95 0 1 157 1453 1609 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 15514 279 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
17688752 17688752 PRJNA512489_S_NODE_1914_length_151_cov_2.175926_g1909_i0 PRJNA512489 1914 151 2.175926 3.28564826 Mesomycoplasma 2923352 Bacteria Bacteria 237 3.17e-58   NTclustered gi|1720621726|gb|CP035041.1| 2100 g1909 i0 99.237 14.7483443708609 131 1 87 0 1 131 1176 1046 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2227 237 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
18962509 18962509 PRJNA512489_S_NODE_275_length_284_cov_5.423237_g270_i0 PRJNA512489 275 284 5.423237 15.40199308 Mesomycoplasma 2923352 Bacteria Bacteria 520 5.98e-143   NTclustered gi|1563681465|emb|LR214949.1| 2100 g270 i0 99.648 17.6901408450704 284 1 100 0 1 284 300123 300406 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 5024 520 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20237303 20237303 PRJNA512489_S_NODE_1276_length_172_cov_2.596899_g1271_i0 PRJNA512489 1276 172 2.596899 4.46666628 Mesomycoplasma 2923352 Bacteria Bacteria 318 1.2899999999999999e-82   NTclustered gi|1563681465|emb|LR214949.1| 2100 g1271 i0 100 33.0174418604651 172 0 100 0 1 172 772127 772298 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 5679 318 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;