RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA512489" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA512489 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19612658 19612658 PRJNA512489_S_NODE_1336_length_169_cov_4.190476_g1331_i0 PRJNA512489 1336 169 4.190476 7.08190444 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 220 3.66e-53   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g1331 i0 90.476 5.85798816568047 168 14 99 2 1 167 1867804 1867638 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 990 220 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;