RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA512489", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 1 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 1 ✖

bioproject 1

  • PRJNA512489 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3037670 3037670 PRJNA512489_S_NODE_1663_length_158_cov_2.200000_g1658_i0 PRJNA512489 1663 158 2.2 3.476 Dreissena polymorpha 45954 Mollusca Mollusca 69.4 1.3e-7   NTclustered gi|2364399888|ref|XM_052410452.1| 45954 g1658 i0 91.837 0.620253164556962 49 4 31 0 110 158 551 503 PREDICTED: Dreissena polymorpha peptidyl-prolyl cis-trans isomerase-like (LOC127868575), mRNA blastn 98 69.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;