RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA512103", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA512103 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11965186 11965186 PRJNA512103_P_NODE_6010_length_574_cov_4.832381_g5612_i0 PRJNA512103 6010 574 4.832381 27.73786694 Labilithrix luteola 1391654 Bacteria Bacteria 595 2.0899999999999994e-165   NTclustered gi|913610804|gb|CP012333.1| 1391654 g5612 i0 86.306 138.308362369338 555 66 96 10 14 563 3941779 3942328 Labilithrix luteola strain DSM 27648, complete genome blastn 79389 595 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
16413537 16413537 PRJNA512103_P_NODE_30293_length_169_cov_6.033333_g29881_i0 PRJNA512103 30293 169 6.033333 10.19633277 Myxococcia 32015 Bacteria Bacteria 235 1.31e-57   NTclustered gi|913610804|gb|CP012333.1| 1391654 g29881 i0 93.125 135.698224852071 160 11 95 0 10 169 3942690 3942531 Labilithrix luteola strain DSM 27648, complete genome blastn 22933 237 0.991561181434599 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
21512821 21512821 PRJNA512103_P_NODE_9677_length_386_cov_9.795252_g9265_i0 PRJNA512103 9677 386 9.795252 37.80967272 root 1 Root_unresolved Root_unresolved 368 3.22e-97   NTclustered gi|1338588479|gb|CP012673.1| 56 g9265 i0 84.496 121.569948186528 387 45 97 12 2 377 3450111 3450493 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 46926 368 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
31467822 31467822 PRJNA512103_P_NODE_16856_length_242_cov_0.746114_g16444_i0 PRJNA512103 16856 242 0.746114 1.80559588 Enhygromyxa salina 215803 Bacteria Bacteria 42.7 0.0258   NR WP_106394628.1 215803 g16444 i0 45 0.495867768595041 40 22 49.6 0 132 13 1 40 WP_106394628.1 hypothetical protein [Enhygromyxa salina] diamond 120 42.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;