RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA512103", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA512103 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15788537 15788537 PRJNA512103_P_NODE_20733_length_210_cov_0.913043_g20321_i0 PRJNA512103 20733 210 0.913043 1.9173903 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 243 1.02e-59   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g20321 i0 89.583 225.790476190476 192 18 91 2 10 201 3447843 3448032 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 47416 243 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
25337268 25337268 PRJNA512103_P_NODE_26120_length_184_cov_1.103704_g25708_i0 PRJNA512103 26120 184 1.103704 2.03081536 Halobacteriovorax 1652133 Bacteria Bacteria 313 6.52e-81   NTclustered gi|1249980216|gb|CP017414.1| 97084 g25708 i0 98.857 5.67934782608696 175 2 95 0 10 184 235950 235776 Halobacteriovorax marinus strain BE01 chromosome, complete genome blastn 1045 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;