RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA512103", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA512103 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22787900 22787900 PRJNA512103_P_NODE_29278_length_173_cov_0.951613_g28866_i0 PRJNA512103 29278 173 0.951613 1.64629049 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 154 3.87e-33   NTclustered gi|325181596|emb|FR824063.1| 890382 g28866 i0 84.516 128.410404624277 155 24 90 0 19 173 56455 56301 Albugo laibachii Nc14, genomic contig CONTIG_18_NC14_v4_198151_220 blastn 22215 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32337461 32337461 PRJNA512103_P_NODE_14999_length_266_cov_1.230415_g14587_i0 PRJNA512103 14999 266 1.230415 3.2729039 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 127 9.04e-33   NR NP_037607.1 4787 g14587 i0 76.8 3.65413533834586 82 19 92.5 0 21 266 92 173 NP_037607.1 NADH dehydrogenase subunit 7 [Phytophthora infestans] diamond 972 127 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;