RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA512103", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA512103 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29871477 29871477 PRJNA512103_P_NODE_30211_length_170_cov_1.074380_g29799_i0 PRJNA512103 30211 170 1.07438 1.826446 root 1 Root_unresolved Root_unresolved 75.5 3.58e-14   NR GFH45819.1 426638 g29799 i0 61.5 16.6764705882353 52 20 91.8 0 158 3 7 58 GFH45819.1 argininosuccinate synthase [Chaetoceros tenuissimus] diamond 2835 75.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
32005456 32005456 PRJNA512103_P_NODE_31218_length_168_cov_0.873950_g30806_i0 PRJNA512103 31218 168 0.87395 1.468236 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0102   NR KAG7362074.1 303405 g30806 i0 41.9 0.767857142857143 43 25 76.8 0 168 40 201 243 KAG7362074.1 FMN-dependent dehydrogenase [Nitzschia inconspicua] diamond 129 43.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;