RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA509429" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA509429 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8138284 8138284 PRJNA509429_P_NODE_2167_length_947_cov_1.706140_g1743_i0 PRJNA509429 2167 947 1.70614 16.1571458 Thermococcus 2263 Archaea Archaea 620 3.58e-205   NR WP_167728776.1 163002 g1743 i0 98.4 4.97360084477297 314 5 99.5 0 943 2 1 314 WP_167728776.1 DNA polymerase domain-containing protein [Thermococcus sp. 9N3] diamond 4710 620 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9N3
8138397 8138397 PRJNA509429_P_NODE_51907_length_150_cov_1.008696_g51079_i0 PRJNA509429 51907 150 1.008696 1.513044 Halococcus dombrowskii 179637 Archaea Archaea 267 4.009999999999999e-67   NTclustered gi|2221492933|gb|CP095007.1| 179637 g51079 i0 98.667 180.72 150 2 100 0 1 150 130948 131097 Halococcus dombrowskii strain H4 plasmid unnamed2, complete sequence blastn 27108 267 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
12589690 12589690 PRJNA509429_P_NODE_13390_length_389_cov_2.415254_g12567_i0 PRJNA509429 13390 389 2.415254 9.39533806 Thermococcus 2263 Archaea Archaea 205 1.5e-59   NR MEO2152736.1 35749 g12567 i0 97.1 11.7917737789203 103 3 79.4 0 1 309 628 730 MEO2152736.1 DNA polymerase domain-containing protein [Thermococcus sp.] diamond 4587 205 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp.
31531105 31531105 PRJNA509429_P_NODE_8976_length_486_cov_1.436807_g8168_i0 PRJNA509429 8976 486 1.436807 6.98288202 Thermococcus henrietii 2016361 Archaea Archaea 314 1.5099999999999996e-96   NR WP_099209949.1 2016361 g8168 i0 96.9 6.92592592592593 160 5 98.8 0 482 3 1028 1187 WP_099209949.1 DNA polymerase domain-containing protein [Thermococcus henrietii] diamond 3366 314 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus henrietii
32179195 32179195 PRJNA509429_P_NODE_14098_length_378_cov_2.032070_g13274_i0 PRJNA509429 14098 378 2.03207 7.6812246 Thermococcus 2263 Archaea Archaea 248 5.4e-76   NR MEO2151751.1 35749 g13274 i0 96 8.96031746031746 126 5 100 0 1 378 136 261 MEO2151751.1 DNA polymerase domain-containing protein [Thermococcus sp.] diamond 3387 249 0.995983935742972 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;