RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA509429", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA509429 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1110775 1110775 PRJNA509429_P_NODE_33461_length_207_cov_1.360465_g32633_i0 PRJNA509429 33461 207 1.360465 2.81616255 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.01e-5   NTclustered gi|14329719|emb|AJ301624.1| 5821 g32633 i0 94.872 9.55072463768116 39 2 19 0 167 205 3530 3492 Plasmodium berghei 28S rRNA gene, strain ANKA blastn 1977 62.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
8138325 8138325 PRJNA509429_P_NODE_34767_length_201_cov_1.445783_g33939_i0 PRJNA509429 34767 201 1.445783 2.90602383 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 244 2.69e-60   NTclustered gi|1620122713|ref|XM_028672112.1| 5849 g33939 i0 91.525 132.004975124378 177 15 88 0 2 178 52 228 Plasmodium gallinaceum polyubiquitin, putative (PGAL8A_00310100), partial mRNA blastn 26533 244 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
10689040 10689040 PRJNA509429_P_NODE_41989_length_175_cov_1.085714_g41161_i0 PRJNA509429 41989 175 1.085714 1.8999995 Coccidia sp. PA5 2565587 SAR_Eukaryotes SAR_Eukaryotes 132 1.84e-26   NTclustered gi|1664596163|dbj|LC474289.1| 2565587 g41161 i0 89.091 61.2857142857143 110 6 62 5 68 175 186 81 Coccidia sp. PA5 gene for 18S ribosomal RNA, partial sequence blastn 10725 132 1 Eukaryota Sar   Apicomplexa Conoidasida       Coccidia sp. PA5
19611317 19611317 PRJNA509429_P_NODE_47256_length_160_cov_1.904000_g46428_i0 PRJNA509429 47256 160 1.904 3.0464 Isospora sp. 1 JRB-2013 1331023 SAR_Eukaryotes SAR_Eukaryotes 75 2.83e-9   NTclustered gi|695117977|gb|KF815278.1| 1331023 g46428 i0 92.308 0.8875 52 4 33 0 24 75 373 322 Isospora sp. 1 JRB-2013 23S ribosomal RNA gene, partial sequence; plastid blastn 142 75 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Isospora Isospora sp. 1 JRB-2013

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;