RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA509429", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA509429 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5588946 5588946 PRJNA509429_P_NODE_18285_length_320_cov_3.245614_g17457_i0 PRJNA509429 18285 320 3.2456140000000002 10.3859648 Pleuropoma jana 1882665 Mollusca Mollusca 137 8.05e-28   NTclustered gi|1050201965|gb|KU342680.1| 1882665 g17457 i0 88.696 9.328125 115 10 36 3 2 115 3708 3596 Pleuropoma jana voucher AM:65394 28S ribosomal RNA gene, partial sequence blastn 2985 137 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Cycloneritida Helicinidae Pleuropoma Pleuropoma jana
10689061 10689061 PRJNA509429_P_NODE_45509_length_164_cov_5.790698_g44681_i0 PRJNA509429 45509 164 5.790698 9.49674472 Mytilus edulis 6550 Mollusca Mollusca 52.8 0.014   NTclustered gi|2912389365|ref|XM_071307228.1| 6550 g44681 i0 92.105 0.231707317073171 38 2 23 1 80 116 1830 1867 PREDICTED: Mytilus edulis succinyl-CoA:acetate/propanoyl-CoA:succinate CoA transferase-like (LOC139516862), mRNA blastn 38 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
11963937 11963937 PRJNA509429_P_NODE_22670_length_276_cov_1.958506_g21842_i0 PRJNA509429 22670 276 1.958506 5.40547656 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.007   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g21842 i0 96.875 0.231884057971014 32 1 12 0 69 100 8068736 8068705 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15787954 15787954 PRJNA509429_P_NODE_3473_length_765_cov_3.084932_g2909_i0 PRJNA509429 3473 765 3.084932 23.5997298 Bradybaena similaris 145626 Mollusca Mollusca 62.1 1.28e-4   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g2909 i0 77.57 0.179084967320261 107 21 14 2 500 604 8051560 8051665 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 137 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
18336901 18336901 PRJNA509429_P_NODE_30395_length_222_cov_1.919786_g29567_i0 PRJNA509429 30395 222 1.919786 4.26192492 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.02   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g29567 i0 100 0.126126126126126 28 0 13 0 12 39 51451720 51451693 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24711286 24711286 PRJNA509429_P_NODE_43440_length_170_cov_2.933333_g42612_i0 PRJNA509429 43440 170 2.933333 4.9866661 Bradybaena similaris 145626 Mollusca Mollusca 62.1 2.36e-5   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g42612 i0 88.462 5.27647058823529 52 5 30 1 68 118 5822395 5822344 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 897 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;