RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA509429", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA509429 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1110769 1110769 PRJNA509429_P_NODE_26841_length_244_cov_1.483254_g26013_i0 PRJNA509429 26841 244 1.483254 3.61913976 Gemmatimonas 173479 Bacteria Bacteria 363 8.949999999999999e-96   NTclustered gi|470475286|ref|NR_076270.1| 173480 g26013 i0 93.522 101.565573770492 247 10 100 4 1 244 321 564 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 24782 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
10688945 10688945 PRJNA509429_P_NODE_21029_length_291_cov_1.921875_g20201_i0 PRJNA509429 21029 291 1.921875 5.59265625 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 448 2.9399999999999993e-121   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g20201 i0 95.07 19.8969072164948 284 14 98 0 3 286 1102753 1103036 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 5790 448 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
14514227 14514227 PRJNA509429_P_NODE_49572_length_155_cov_1.008333_g48744_i0 PRJNA509429 49572 155 1.008333 1.56291615 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 281 1.49e-71   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g48744 i0 99.355 104.903225806452 155 1 100 0 1 155 1103999 1103845 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 16260 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
20887386 20887386 PRJNA509429_P_NODE_51357_length_151_cov_1.318966_g50529_i0 PRJNA509429 51357 151 1.318966 1.99163866 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 219 1.15e-52   NTclustered gi|2874253978|emb|OY970303.1| 412054 g50529 i0 92.715 16.9139072847682 151 11 100 0 1 151 1903684 1903834 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2554 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27045570 27045570 PRJNA509429_P_NODE_28962_length_231_cov_1.423469_g28134_i0 PRJNA509429 28962 231 1.423469 3.28821339 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.00835   NR HXI66283.1 2448054 g28134 i0 32.4 2.71428571428571 68 45 88.3 1 2 205 71 137 HXI66283.1 magnesium chelatase domain-containing protein [Gemmatimonadales bacterium] diamond 627 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;