RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA509429", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA509429 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
485242 485242 PRJNA509429_P_NODE_42241_length_174_cov_1.460432_g41413_i0 PRJNA509429 42241 174 1.460432 2.54115168 Ripella platypodia 2047821 Discosea other_Eukaryota 289 1.02e-73   NTclustered gi|1269228378|gb|MF683503.1| 2047821 g41413 i0 96.552 101.413793103448 174 6 100 0 1 174 1505 1332 Ripella platypodia clone 26.10.41 18S ribosomal RNA gene, partial sequence blastn 17646 289 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
4312162 4312162 PRJNA509429_P_NODE_39364_length_183_cov_1.804054_g38536_i0 PRJNA509429 39364 183 1.804054 3.30141882 Ripella tribonemae 2047823 Discosea other_Eukaryota 291 3.03e-74   NTclustered gi|1269228452|gb|MF683577.1| 2047823 g38536 i0 98.204 85.1147540983606 167 2 91 1 17 183 687 852 Ripella tribonemae clone 70.1.12 18S ribosomal RNA gene, partial sequence blastn 15576 291 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
8138265 8138265 PRJNA509429_P_NODE_17147_length_334_cov_2.575251_g16319_i0 PRJNA509429 17147 334 2.575251 8.60133834 Vannella mustalahtiana 2841357 Discosea other_Eukaryota 460 4.409999999999999e-125   NTclustered gi|2047416624|gb|MZ329079.1| 2841357 g16319 i0 92.615 94.5568862275449 325 17 96 7 15 334 636 958 Vannella sp. AKud-2021a clone NGD4255 small subunit ribosomal RNA gene, partial sequence blastn 31582 460 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella mustalahtiana
10039332 10039332 PRJNA509429_P_NODE_47628_length_159_cov_2.080645_g46800_i0 PRJNA509429 47628 159 2.080645 3.30822555 Vannella 95228 Discosea other_Eukaryota 102 1.29e-17   NTclustered gi|300078499|gb|GU001161.1| 197531 g46800 i0 95.312 33.1698113207547 64 3 40 0 96 159 1247 1184 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5274 102 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14514103 14514103 PRJNA509429_P_NODE_14532_length_371_cov_2.000000_g13707_i0 PRJNA509429 14532 371 2 7.42 Vannella septentrionalis 197531 Discosea other_Eukaryota 459 1.7799999999999998e-124   NTclustered gi|300078499|gb|GU001161.1| 197531 g13707 i0 89.182 55.6846361185984 379 26 100 9 1 371 2834 2463 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20659 459 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
20237232 20237232 PRJNA509429_P_NODE_44196_length_168_cov_1.804511_g43368_i0 PRJNA509429 44196 168 1.804511 3.03157848 Platyamoeba 197524 Discosea other_Eukaryota 169 1.34e-37   NTclustered gi|2675812016|gb|PP339682.1| 197527 g43368 i0 88.356 86.4821428571429 146 9 85 8 27 168 207 348 Platyamoeba placida isolate TFES2 small subunit ribosomal RNA gene, partial sequence blastn 14529 169 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;