RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA508758" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA508758 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11963278 11963278 PRJNA508758_P_NODE_3270_length_1406_cov_6.045761_g2652_i1 PRJNA508758 3270 1406 6.045761 85.00339966 Pedinophyceae sp. YPF-7 765719 Plants Plants 256 1.17e-75   NR CAG9460272.1 765719 g2652 i1 35.8 1.70910384068279 399 232 81.9 5 1305 154 24 413 CAG9460272.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 2403 256 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
29555513 29555513 PRJNA508758_P_NODE_50990_length_297_cov_2.388393_g49942_i0 PRJNA508758 50990 297 2.388393 7.09352721 Eukaryota 2759 Plants Plants 96.3 1.19e-20   NR GIL44614.1 51714 g49942 i0 44.2 4.58585858585859 95 52 96 1 285 1 1493 1586 GIL44614.1 hypothetical protein Vafri_2125 [Volvox africanus] diamond 1362 96.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;