RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA508758", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA508758 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27614394 27614394 PRJNA508758_P_NODE_70684_length_257_cov_0.869565_g69636_i0 PRJNA508758 70684 257 0.869565 2.23478205 Desulfopila sp. 2212462 Bacteria Bacteria 47.4 0.00101   NR MFN2355136.1 2212462 g69636 i0 34.5 1.01556420233463 87 45 96.9 2 4 252 341 419 MFN2355136.1 proton-conducting transporter membrane subunit [Desulfopila sp.] diamond 261 47.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfopila Desulfopila sp.
28782295 28782295 PRJNA508758_P_NODE_72287_length_254_cov_0.922652_g71239_i0 PRJNA508758 72287 254 0.922652 2.34353608 Desulfovermiculus sp. 2821143 Bacteria Bacteria 53.9 2.38e-7   NR MFO7876311.1 2821143 g71239 i0 96 0.295275590551181 25 1 29.5 0 150 76 24 48 MFO7876311.1 hypothetical protein [Desulfovermiculus sp.] diamond 75 53.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.
29618422 29618422 PRJNA508758_P_NODE_60990_length_276_cov_1.137931_g59942_i0 PRJNA508758 60990 276 1.137931 3.14068956 Pseudomonadati 3379134 Bacteria Bacteria 117 1.07e-28   NR MBD5641005.1 885 g59942 i0 57.1 9.98913043478261 91 34 98.9 1 3 275 293 378 MBD5641005.1 nitrate reductase subunit beta [Desulfovibrio sp.] diamond 2757 118 0.991525423728814 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;