RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA508758", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA508758 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28498449 28498449 PRJNA508758_P_NODE_45207_length_313_cov_1.283333_g44159_i0 PRJNA508758 45207 313 1.283333 4.01683229 Nitrospirota bacterium 2026887 Bacteria Bacteria 53.1 1.4e-6   NR HDH05774.1 2026887 g44159 i0 41.4 0.977635782747604 58 34 55.6 0 218 45 15 72 HDH05774.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein [Nitrospirota bacterium] diamond 306 53.1 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29098292 29098292 PRJNA508758_P_NODE_70468_length_257_cov_1.597826_g69420_i0 PRJNA508758 70468 257 1.597826 4.10641282 Nitrospirota bacterium 2026887 Bacteria Bacteria 58.5 8.84e-8   NR MBI5137561.1 2026887 g69420 i0 57.8 0.525291828793774 45 19 52.5 0 253 119 231 275 MBI5137561.1 pyrroline-5-carboxylate reductase [Nitrospirota bacterium] diamond 135 58.5 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;