RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA508758", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA508758 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1760013 1760013 PRJNA508758_P_NODE_69362_length_259_cov_1.655914_g68314_i0 PRJNA508758 69362 259 1.655914 4.28881726 Mariniplasma anaerobium 2735436 Bacteria Bacteria 56.5 0.002   NTclustered gi|1964073164|dbj|AP024412.1| 2735436 g68314 i0 100 0.115830115830116 30 0 12 0 122 151 1881102 1881073 Mariniplasma anaerobium DNA, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Mariniplasma Mariniplasma anaerobium
4311201 4311201 PRJNA508758_P_NODE_11064_length_639_cov_3.305654_g10075_i0 PRJNA508758 11064 639 3.305654 21.12312906 Candidatus Phytoplasma cynodontis 72990 Bacteria Bacteria 56.5 0.005   NTclustered gi|2511947619|gb|CP126225.1| 72990 g10075 i0 100 0.0469483568075117 30 0 5 0 389 418 434995 435024 MAG: Candidatus Phytoplasma cynodontis isolate GY2015 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma cynodontis
13864488 13864488 PRJNA508758_P_NODE_88511_length_241_cov_0.916667_g87463_i0 PRJNA508758 88511 241 0.916667 2.20916747 Spiroplasma 2132 Bacteria Bacteria 80.5 9.95e-11   NTclustered gi|2706542408|emb|OZ026469.1| 3066287 g87463 i0 85.526 0.630705394190871 76 11 32 0 135 210 843583 843658 Spiroplasma endosymbiont of Polydrusus cervinus isolate 54744 genome assembly, chromosome: 1 blastn 152 80.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Polydrusus cervinus
24710765 24710765 PRJNA508758_P_NODE_6640_length_912_cov_2.363528_g5825_i0 PRJNA508758 6640 912 2.363528 21.55537536 Malacoplasma muris 2119 Bacteria Bacteria 1114 0   NTclustered gi|299851933|gb|HM135461.1| 2119 g5825 i0 88.889 92.1524122807018 918 85 100 15 1 912 526 1432 Mycoplasma muris strain ATCC 33757 23S ribosomal RNA gene, partial sequence blastn 84043 1114 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma muris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;