RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA508758", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA508758 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31910434 31910434 PRJNA508758_P_NODE_33597_length_353_cov_1.753571_g32549_i0 PRJNA508758 33597 353 1.753571 6.19010563 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 44.7 0.027   NR HTG45229.1 2499141 g32549 i0 30 0.934844192634561 110 65 83.3 1 44 337 335 444 HTG45229.1 Ig-like domain-containing protein [Verrucomicrobiia bacterium] diamond 330 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32732438 32732438 PRJNA508758_P_NODE_78640_length_248_cov_0.880000_g77592_i0 PRJNA508758 78640 248 0.88 2.1824 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 42.4 0.0235   NR MCP5521441.1 2026801 g77592 i0 34.7 0.870967741935484 72 44 83.5 2 18 224 49 120 MCP5521441.1 type II toxin-antitoxin system VapC family toxin [Verrucomicrobiales bacterium] diamond 216 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;