RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA506002", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 5 ✖

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA506002 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2386089 2386089 PRJNA506002_S_NODE_62542_length_245_cov_0.895349_g62296_i0 PRJNA506002 62542 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 453 5.1900000000000006e-123   NTclustered gi|2323232558|gb|CP109813.1| 195 g62296 i0 100 103.285714285714 245 0 100 0 1 245 314382 314626 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 25305 453 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
4938788 4938788 PRJNA506002_S_NODE_50024_length_261_cov_1.994681_g49778_i0 PRJNA506002 50024 261 1.994681 5.20611741 root 1 Root_unresolved Root_unresolved 483 7.12e-132   NTclustered gi|2562786027|gb|CP120256.1| 197 g49778 i0 100 111 261 0 100 0 1 261 1483152 1482892 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 28971 483 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
6214023 6214023 PRJNA506002_S_NODE_36705_length_290_cov_1.064516_g36459_i0 PRJNA506002 36705 290 1.064516 3.0870964 Bacteria 2 Bacteria Bacteria 531 2.83e-146   NTclustered gi|2323232558|gb|CP109813.1| 195 g36459 i0 99.655 100.641379310345 290 1 100 0 1 290 552317 552028 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 29186 531 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
8763565 8763565 PRJNA506002_S_NODE_64307_length_243_cov_1.158824_g64061_i0 PRJNA506002 64307 243 1.158824 2.81594232 Bacteria 2 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2562786027|gb|CP120256.1| 197 g64061 i0 100 103.687242798354 243 0 100 0 1 243 1302659 1302417 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 25196 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
17688392 17688392 PRJNA506002_S_NODE_45254_length_271_cov_0.974747_g45008_i0 PRJNA506002 45254 271 0.974747 2.64156437 root 1 Root_unresolved Root_unresolved 468 2.08e-127   NTclustered gi|2323232558|gb|CP109813.1| 195 g45008 i0 97.786 100 271 6 100 0 1 271 553338 553068 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 27100 468 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;