RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA506002", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA506002 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29887669 29887669 PRJNA506002_S_NODE_6631_length_449_cov_1.010638_g6386_i0 PRJNA506002 6631 449 1.010638 4.53776462 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 73.2 4.95e-13   NR MBQ7621768.1 2517205 g6386 i0 43.8 3.11358574610245 112 51 67.5 2 442 140 43 153 MBQ7621768.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 1398 73.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
30740551 30740551 PRJNA506002_S_NODE_61354_length_246_cov_0.890173_g61108_i0 PRJNA506002 61354 246 0.890173 2.18982558 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 130 4.59e-36   NR MBQ7621769.1 2517205 g61108 i0 79 0.98780487804878 81 17 98.8 0 3 245 119 199 MBQ7621769.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 243 130 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;