RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA506002" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA506002 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1110494 1110494 PRJNA506002_S_NODE_11801_length_394_cov_1.760125_g11555_i0 PRJNA506002 11801 394 1.760125 6.9348925 Fusobacterium 848 Bacteria Bacteria 691 0   NTclustered gi|2706407748|gb|CP077116.1| 76857 g11555 i0 98.964 97.2817258883249 386 4 98 0 1 386 2451604 2451989 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 38329 691 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
1110564 1110564 PRJNA506002_S_NODE_64361_length_243_cov_1.052941_g64115_i0 PRJNA506002 64361 243 1.052941 2.55864663 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|2445153921|gb|CP117797.1| 851 g64115 i0 100 1.38271604938272 28 0 12 0 172 199 2260629 2260602 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 336 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
3035062 3035062 PRJNA506002_S_NODE_42563_length_276_cov_3.453202_g42317_i0 PRJNA506002 42563 276 3.453202 9.53083752 Leptotrichia mesophila 3239303 Bacteria Bacteria 204 6.62e-48   NTclustered gi|2785242249|gb|CP165646.1| 3239303 g42317 i0 80.755 15.7173913043478 265 47 96 4 13 276 180400 180661 Leptotrichia sp. HSP-342 chromosome, complete genome blastn 4338 204 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia mesophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;