RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA506002", tax_kingdom = "Fungi" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 13 ✖

tax_kingdom 1

  • Fungi · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA506002 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3035286 3035286 PRJNA506002_S_NODE_67623_length_229_cov_4.012821_g67377_i0 PRJNA506002 67623 229 4.012821 9.18936009 Suillus luteus 5384 Fungi Fungi 58.4 4.39e-4   NTclustered gi|998623171|emb|LN999935.1| 5384 g67377 i0 97.143 0.655021834061135 35 0 15 1 188 222 34 1 Suillus luteus mRNA for Isocitrate lyase (ICL gene), isolate sp9 blastn 150 58.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus luteus
4310931 4310931 PRJNA506002_S_NODE_44464_length_272_cov_2.376884_g44218_i0 PRJNA506002 44464 272 2.376884 6.46512448 Malassezia restricta 76775 Fungi Fungi 425 1.28e-114   NTclustered gi|1546638515|ref|XM_027630899.1| 76775 g44218 i0 100 0.845588235294118 230 0 85 0 35 264 630 401 Malassezia restricta large subunit ribosomal protein L13e (MRET_4272), partial mRNA blastn 230 425 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
5587794 5587794 PRJNA506002_S_NODE_51025_length_259_cov_2.795699_g50779_i0 PRJNA506002 51025 259 2.795699 7.24086041 Malassezia restricta 76775 Fungi Fungi 464 2.5599999999999998e-126   NTclustered gi|1546631674|ref|XM_027627497.1| 76775 g50779 i0 100 1.89189189189189 251 0 97 0 1 251 767 517 Malassezia restricta large subunit ribosomal protein L15 (MRET_0870), partial mRNA blastn 490 464 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
6214025 6214025 PRJNA506002_S_NODE_38485_length_285_cov_4.924528_g38239_i0 PRJNA506002 38485 285 4.924528 14.0349048 Phenoliferia sp. Uapishka_3 3038894 Fungi Fungi 59.3 8.72e-8   NR KAK4705419.1 3038894 g38239 i0 55.1 0.515789473684211 49 21 51.6 1 33 179 121 168 KAK4705419.1 hypothetical protein P7C70_g780, partial [Phenoliferia sp. Uapishka_3] diamond 147 59.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Kriegeriales Kriegeriaceae Phenoliferia Phenoliferia sp. Uapishka_3
9411897 9411897 PRJNA506002_S_NODE_21148_length_340_cov_1.333333_g20902_i0 PRJNA506002 21148 340 1.333333 4.5333322 Malassezia restricta 76775 Fungi Fungi 501 2.649999999999999e-137   NTclustered gi|1546637503|ref|XM_027630394.1| 76775 g20902 i0 99.635 2.45294117647059 274 1 81 0 9 282 6 279 Malassezia restricta uncharacterized protein (MRET_3767), partial mRNA blastn 834 501 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
10687745 10687745 PRJNA506002_S_NODE_41249_length_279_cov_2.422330_g41003_i0 PRJNA506002 41249 279 2.42233 6.7583007 Malassezia restricta 76775 Fungi Fungi 459 1.3000000000000002e-124   NTclustered gi|1546637217|ref|XM_027630251.1| 76775 g41003 i0 98.099 0.942652329749104 263 5 94 0 9 271 560 822 Malassezia restricta RNA recognition motif domain protein (MRET_3624), partial mRNA blastn 263 459 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
15786422 15786422 PRJNA506002_S_NODE_12993_length_385_cov_2.958333_g12747_i0 PRJNA506002 12993 385 2.958333 11.38958205 Malassezia restricta 76775 Fungi Fungi 444 5.1899999999999996e-120   NTclustered gi|1546632402|ref|XM_027627861.1| 76775 g12747 i0 99.187 47.5558441558442 246 2 64 0 8 253 1138 1383 Malassezia restricta elongation factor 1-alpha (MRET_1234), partial mRNA blastn 18309 444 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
17061321 17061321 PRJNA506002_S_NODE_43594_length_274_cov_1.781095_g43348_i0 PRJNA506002 43594 274 1.781095 4.8802003 Malassezia restricta 76775 Fungi Fungi 106 1.9e-18   NTclustered gi|1546630263|ref|XM_027626792.1| 76775 g43348 i0 100 0.208029197080292 57 0 21 0 8 64 586 642 Malassezia restricta uncharacterized protein (MRET_0165), partial mRNA blastn 57 106 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
20885851 20885851 PRJNA506002_S_NODE_19417_length_348_cov_1.621818_g19171_i0 PRJNA506002 19417 348 1.621818 5.64392664 Malassezia globosa 76773 Fungi Fungi 625 1.5499999999999995e-174   NTclustered gi|164658472|ref|XM_001730310.1| 425265 g19171 i0 99.707 0.979885057471264 341 1 98 0 1 341 105 445 Malassezia globosa CBS 7966 uncharacterized protein (MGL_2744), partial mRNA blastn 341 625 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
24709851 24709851 PRJNA506002_S_NODE_30660_length_306_cov_1.648069_g30414_i0 PRJNA506002 30660 306 1.648069 5.04309114 Malassezia pachydermatis 77020 Fungi Fungi 179 4.6099999999999996e-54   NR XP_017990928.1 77020 g30414 i0 87.9 4.85294117647059 99 12 97.1 0 8 304 172 270 XP_017990928.1 proteasome endopeptidase complex beta subunit [Malassezia pachydermatis] diamond 1485 179 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia pachydermatis
27819272 27819272 PRJNA506002_S_NODE_26244_length_320_cov_1.157895_g25998_i0 PRJNA506002 26244 320 1.157895 3.705264 Kwoniella 490731 Fungi Fungi 47.8 0.00157   NR XP_031862267.1 1734106 g25998 i0 51.2 1.425 43 18 37.5 1 2 121 584 626 XP_031862267.1 uncharacterized protein CI109_105511 [Kwoniella shandongensis] diamond 456 47.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Kwoniella Kwoniella shandongensis
28940496 28940496 PRJNA506002_S_NODE_29808_length_308_cov_3.719149_g29562_i0 PRJNA506002 29808 308 3.719149 11.45497892 Rhodotorula toruloides 5286 Fungi Fungi 49.7 3.05e-4   NR KAJ8294897.1 5286 g29562 i0 38.4 0.711038961038961 73 43 71.1 1 226 8 65 135 KAJ8294897.1 Serine/threonine-protein kinase SCH9 [Rhodotorula toruloides] diamond 219 49.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula toruloides
30661243 30661243 PRJNA506002_S_NODE_45633_length_270_cov_1.172589_g45387_i0 PRJNA506002 45633 270 1.172589 3.1659903 root 1 Root_unresolved Root_unresolved 51.2 2.59e-5   NR GJN94735.1 86838 g45387 i0 65.7 3.12222222222222 35 12 38.9 0 2 106 153 187 GJN94735.1 hypothetical protein Rhopal_007826-T1 [Rhodotorula paludigena] diamond 843 51.6 0.992248062015504 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula paludigena

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;