RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA506002" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA506002 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8137093 8137093 PRJNA506002_S_NODE_42087_length_277_cov_4.828431_g41841_i0 PRJNA506002 42087 277 4.828431 13.37475387 Eukaryota 2759 Plants Plants 123 2.31e-30   NR CAK0747952.1 1274662 g41841 i0 74.4 10.2129963898917 90 20 97.5 1 4 273 92 178 CAK0747952.1 hypothetical protein CVIRNUC_001802 [Coccomyxa viridis] diamond 2829 124 0.991935483870968 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
17061197 17061197 PRJNA506002_S_NODE_27714_length_315_cov_1.780992_g27468_i0 PRJNA506002 27714 315 1.780992 5.6101248 Trebouxia sp. SL0000003 3350044 Plants Plants 110 1.73e-19   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g27468 i0 94.366 0.434920634920635 71 4 23 0 100 170 1022621 1022551 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 137 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
27677638 27677638 PRJNA506002_S_NODE_46924_length_267_cov_1.793814_g46678_i0 PRJNA506002 46924 267 1.793814 4.78948338 Trebouxia sp. C 2796353 Plants Plants 105 4.22e-24   NR KAL3144905.1 3373145 g46678 i0 96.4 0.617977528089888 55 2 61.8 0 9 173 140 194 KAL3144905.1 hypothetical protein ABBQ32_003415 [Trebouxia sp. C0010 RCD-2024] diamond 165 105 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0010 RCD-2024

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;