RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA506002" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA506002 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27456516 27456516 PRJNA506002_S_NODE_65723_length_242_cov_0.911243_g65477_i0 PRJNA506002 65723 242 0.911243 2.20520806 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.1 0.0269   NR MEI6073151.1 2499141 g65477 i0 35 0.743801652892562 60 36 70.7 1 206 36 495 554 MEI6073151.1 alpha-L-fucosidase [Verrucomicrobiia bacterium] diamond 180 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28561547 28561547 PRJNA506002_S_NODE_64247_length_243_cov_1.282353_g64001_i0 PRJNA506002 64247 243 1.282353 3.11611779 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0337   NR MDH4373636.1 2026799 g64001 i0 32.8 0.716049382716049 58 35 66.7 1 60 221 53 110 MDH4373636.1 S26 family signal peptidase [Verrucomicrobiota bacterium] diamond 174 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32732389 32732389 PRJNA506002_S_NODE_400_length_1058_cov_9.538071_g255_i0 PRJNA506002 400 1058 9.538071 100.91279118 Oceaniferula marina 2748318 Bacteria Bacteria 49.7 0.0037   NR WP_178930618.1 2748318 g255 i0 29.4 0.771266540642722 136 81 37.1 5 660 1052 33 158 WP_178930618.1 complex I 24 kDa subunit family protein [Oceaniferula marina] diamond 816 49.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Oceaniferula Oceaniferula marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;