RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA505837" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA505837 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12589448 12589448 PRJNA505837_S_NODE_650_length_181_cov_2.138158_g635_i0 PRJNA505837 650 181 2.138158 3.87006598 Staphylococcus 1279 Bacteria Bacteria 335 1.36e-87   NTclustered gi|2521719496|gb|CP127601.1| 1280 g635 i0 100 488 181 0 100 0 1 181 1949469 1949649 Staphylococcus aureus strain C322 chromosome, complete genome blastn 88328 335 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
24062431 24062431 PRJNA505837_S_NODE_959_length_153_cov_2.677419_g944_i0 PRJNA505837 959 153 2.677419 4.09645107 Bacillales 1385 Bacteria Bacteria 283 4.0799999999999995e-72   NTclustered gi|1176884116|gb|CP020463.1| 1282 g944 i0 100 463.150326797386 153 0 100 0 1 153 2277979 2278131 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 70862 283 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;