RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA505837" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA505837 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3034778 3034778 PRJNA505837_S_NODE_763_length_169_cov_5.664286_g748_i0 PRJNA505837 763 169 5.664286 9.57264334 Lysiphlebia japonica 104022 Arthropoda Arthropoda 272 9.95e-69   NTclustered gi|1251773067|gb|KY809861.1| 104022 g748 i0 96.386 45.0710059171598 166 5 98 1 4 169 521 357 Lysiphlebia japonica ribosomal protein S18 mRNA, complete cds blastn 7617 272 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Braconidae Lysiphlebia Lysiphlebia japonica
20885745 20885745 PRJNA505837_S_NODE_97_length_417_cov_9.878866_g82_i0 PRJNA505837 97 417 9.878866 41.19487122 Lysiphlebia japonica 104022 Arthropoda Arthropoda 713 0   NTclustered gi|1251773071|gb|KY809863.1| 104022 g82 i0 97.602 36.5299760191847 417 9 100 1 1 417 16 431 Lysiphlebia japonica ribosomal protein L27 mRNA, complete cds blastn 15233 713 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Braconidae Lysiphlebia Lysiphlebia japonica
24709640 24709640 PRJNA505837_S_NODE_200_length_318_cov_6.560554_g185_i0 PRJNA505837 200 318 6.560554 20.86256172 Leiobunum subalpinum 3086104 Arthropoda Arthropoda 52.8 0.03   NTclustered gi|2920024459|emb|OZ239127.1| 3086104 g185 i0 100 0.176100628930818 28 0 9 0 4 31 38454663 38454690 Leiobunum subalpinum genome assembly, chromosome: 10 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Opiliones Sclerosomatidae Leiobunum Leiobunum subalpinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;