RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA505329" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 23 ✖

bioproject 1

  • PRJNA505329 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4938526 4938526 PRJNA505329_P_NODE_25044_length_194_cov_3.082759_g24573_i0 PRJNA505329 25044 194 3.082759 5.98055246 Natrialbaceae 1644061 Archaea Archaea 202 1.5699999999999998e-47   NTclustered gi|1621086513|gb|CP031303.1| 121872 g24573 i0 85.784 58.1134020618557 204 14 97 1 4 192 751860 751657 Natrinema thermotolerans strain A29 chromosome, complete genome blastn 11274 202 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema thermotolerans
5587299 5587299 PRJNA505329_P_NODE_47165_length_164_cov_2.452174_g46694_i0 PRJNA505329 47165 164 2.452174 4.02156536 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 257 2.7e-64   NTclustered gi|822662803|gb|CP008875.1| 1604004 g46694 i0 95.092 6.97560975609756 163 8 99 0 2 164 108518 108356 Halanaeroarchaeum sulfurireducens strain HSR2 plasmid pHSR2-01, complete sequence blastn 1144 257 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
16412874 16412874 PRJNA505329_P_NODE_12073_length_233_cov_3.266304_g11602_i0 PRJNA505329 12073 233 3.266304 7.61048832 Methanosarcina 2207 Archaea Archaea 187 5.48e-43   NTclustered gi|470477259|ref|NR_076372.1| 2208 g11602 i0 100 178.896995708155 101 0 85 0 133 233 2254 2354 Methanosarcina barkeri strain Fusaro 23S ribosomal RNA gene, complete sequence blastn 41683 187 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
18335027 18335027 PRJNA505329_P_NODE_30675_length_186_cov_2.233577_g30204_i0 PRJNA505329 30675 186 2.233577 4.15445322 Halobacterium sp. BOL4-2 2810537 Archaea Archaea 261 2.43e-65   NTclustered gi|1992393335|gb|CP070334.1| 2810537 g30204 i0 94.152 10.0591397849462 171 10 92 0 11 181 71573 71743 Halobacterium sp. BOL4-2 plasmid pBOL4-2_105.9, complete sequence blastn 1871 261 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. BOL4-2
18335192 18335192 PRJNA505329_P_NODE_43015_length_168_cov_1.722689_g42544_i0 PRJNA505329 43015 168 1.722689 2.89411752 Methanomassiliicoccaceae archaeon DOK 1535962 Archaea Archaea 278 2.14e-70   NTclustered gi|1799215713|gb|CP047880.1| 1535962 g42544 i0 96.97 18.1547619047619 165 5 98 0 4 168 1504145 1503981 Methanomassiliicoccaceae archaeon DOK chromosome, complete genome blastn 3050 278 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon DOK
22787417 22787417 PRJNA505329_P_NODE_40638_length_171_cov_1.680328_g40167_i0 PRJNA505329 40638 171 1.680328 2.87336088 Pyrobaculum 2276 Archaea Archaea 311 2.14e-80   NTclustered gi|294441|gb|L07511.1|PYBRGDY 2277 g40167 i0 100 98.2456140350877 168 0 98 0 4 171 894 1061 Pyrobaculum islandicum 16S ribosomal RNA gene blastn 16800 311 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum islandicum
22787426 22787426 PRJNA505329_P_NODE_42138_length_169_cov_0.866667_g41667_i0 PRJNA505329 42138 169 0.866667 1.46466723 Methanobrevibacter 2172 Archaea Archaea 226 7.859999999999997e-55   NTclustered gi|2791693311|gb|CP144200.1| 2173 g41667 i0 93.464 110.171597633136 153 9 91 1 1 153 1284970 1284819 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 18619 226 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
23435724 23435724 PRJNA505329_P_NODE_23859_length_197_cov_3.925676_g23388_i0 PRJNA505329 23859 197 3.925676 7.73358172 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 180 7.499999999999998e-41   NTclustered gi|937513727|gb|CP012850.1| 1353260 g23388 i0 99 14.2842639593909 100 1 98 0 97 196 849303 849402 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 2814 180 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
24709486 24709486 PRJNA505329_P_NODE_44460_length_167_cov_0.881356_g43989_i0 PRJNA505329 44460 167 0.881356 1.47186452 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 270 3.5499999999999993e-68   NTclustered gi|808354332|gb|CP011097.2| 1603555 g43989 i0 96.341 0.982035928143713 164 6 98 0 1 164 1356880 1357043 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 164 270 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
26697141 26697141 PRJNA505329_P_NODE_35001_length_179_cov_3.784615_g34530_i0 PRJNA505329 35001 179 3.784615 6.77446085 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 80.5 7.49e-16   NR MBI2667934.1 2026803 g34530 i0 63.8 4.8268156424581 58 21 97.2 0 175 2 71 128 MBI2667934.1 lysine--tRNA ligase [Candidatus Woesearchaeota archaeon] diamond 864 80.5 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon
27013750 27013750 PRJNA505329_P_NODE_4122_length_401_cov_4.142045_g3657_i0 PRJNA505329 4122 401 4.142045 16.60960045 Thermoplasmatales archaeon BRNA1 1054217 Archaea Archaea 45.8 0.0154   NR AGI47117.1 1054217 g3657 i0 45.8 0.359102244389027 48 26 35.9 0 6 149 361 408 AGI47117.1 hypothetical protein TALC_00102 [Thermoplasmatales archaeon BRNA1] diamond 144 45.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon BRNA1
28087667 28087667 PRJNA505329_P_NODE_7065_length_276_cov_2.251101_g6594_i0 PRJNA505329 7065 276 2.251101 6.21303876 Methanobacterium sp. 2164 Archaea Archaea 116 5.569999999999999e-28   NR MEN6293712.1 2164 g6594 i0 65.1 1.83695652173913 86 25 88 2 4 246 123 208 MEN6293712.1 portal protein [Methanobacterium sp.] diamond 507 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
28245416 28245416 PRJNA505329_P_NODE_11246_length_233_cov_3.565217_g10775_i0 PRJNA505329 11246 233 3.565217 8.30695561 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 47 5.54e-5   NR MBI4451841.1 2026803 g10775 i0 90.5 0.270386266094421 21 2 27 0 232 170 25 45 MBI4451841.1 hypothetical protein [Candidatus Woesearchaeota archaeon] diamond 63 47 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon
29413799 29413799 PRJNA505329_P_NODE_33249_length_182_cov_2.330827_g32778_i0 PRJNA505329 33249 182 2.330827 4.24210514 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 122 1.4899999999999998e-30   NR MEK6887837.1 3121606 g32778 i0 94.9 1.94505494505495 59 3 97.3 0 180 4 1422 1480 MEK6887837.1 DNA polymerase domain-containing protein [Candidatus Aenigmatarchaeota archaeon] diamond 354 122 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon
29445271 29445271 PRJNA505329_P_NODE_26490_length_192_cov_2.146853_g26019_i0 PRJNA505329 26490 192 2.146853 4.12195776 Natronomonas sp. LN261 2750669 Archaea Archaea 46.2 1.9e-4   NR WP_181692398.1 2750669 g26019 i0 100 0.375 24 0 37.5 0 74 3 1 24 WP_181692398.1 DUF357 domain-containing protein [Natronomonas sp. LN261] diamond 72 46.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
30772347 30772347 PRJNA505329_P_NODE_51814_length_155_cov_3.698113_g51343_i0 PRJNA505329 51814 155 3.698113 5.73207515 archaeon 1906665 Archaea Archaea 97.1 8.34e-22   NR HUX65752.1 1906665 g51343 i0 100 1.89677419354839 49 0 94.8 0 151 5 488 536 HUX65752.1 hypothetical protein [archaeon] diamond 294 97.1 1 Archaea               archaeon
30850789 30850789 PRJNA505329_P_NODE_19554_length_201_cov_5.046053_g19083_i0 PRJNA505329 19554 201 5.046053 10.14256653 root 1 Root_unresolved Root_unresolved 53.5 2.25e-6   NR MEK6882420.1 2026764 g19083 i0 51.1 1.13432835820896 45 18 61.2 1 134 12 15 59 MEK6882420.1 hypothetical protein [Nanoarchaeota archaeon] diamond 228 53.9 0.992578849721707 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
31056891 31056891 PRJNA505329_P_NODE_48275_length_163_cov_2.333333_g47804_i0 PRJNA505329 48275 163 2.333333 3.80333279 Methanocaldococcus jannaschii 2190 Archaea Archaea 97.8 1.18e-24   NR 2J9D_E 2190 g47804 i0 94.1 0.938650306748466 51 3 93.9 0 10 162 56 106 2J9D_E Chain E, HYPOTHETICAL NITROGEN REGULATORY PII-LIKE PROTEIN MJ0059 [Methanocaldococcus jannaschii] diamond 153 97.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
31246139 31246139 PRJNA505329_P_NODE_32535_length_183_cov_3.044776_g32064_i0 PRJNA505329 32535 183 3.044776 5.57194008 Candidatus Woesearchaeota archaeon CG1 2026803 Archaea Archaea 72.4 4.93e-13   NR PIN74741.1 1974463 g32064 i0 65.5 1.77049180327869 58 20 95.1 0 174 1 245 302 PIN74741.1 MAG: hypothetical protein COV18_05975 [Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_37_12] diamond 324 72.4 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_37_12
31261631 31261631 PRJNA505329_P_NODE_37015_length_176_cov_3.220472_g36544_i0 PRJNA505329 37015 176 3.220472 5.66803072 root 1 Root_unresolved Root_unresolved 101 1.67e-23   NR HJW96663.1 1906665 g36544 i0 69 5.89772727272727 58 18 98.9 0 175 2 88 145 HJW96663.1 adenosylhomocysteinase [archaeon] diamond 1038 101 1 Archaea               archaeon
31435871 31435871 PRJNA505329_P_NODE_39336_length_173_cov_1.653226_g38865_i0 PRJNA505329 39336 173 1.653226 2.86008098 Nitrosopumilales archaeon 2026768 Archaea Archaea 111 1.13e-30   NR MBI3253335.1 2026768 g38865 i0 100 0.815028901734104 47 0 81.5 0 32 172 1 47 MBI3253335.1 hypothetical protein [Nitrosopumilales archaeon] diamond 141 111 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales     Nitrosopumilales archaeon
31847022 31847022 PRJNA505329_P_NODE_51957_length_155_cov_2.415094_g51486_i0 PRJNA505329 51957 155 2.415094 3.7433957 Nitrosopumilales archaeon 2026768 Archaea Archaea 101 1.73e-23   NR MBI2006572.1 2026768 g51486 i0 100 2.96129032258065 51 0 98.7 0 154 2 146 196 MBI2006572.1 hypothetical protein [Nitrosopumilales archaeon] diamond 459 101 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales     Nitrosopumilales archaeon
32606287 32606287 PRJNA505329_P_NODE_26120_length_193_cov_1.423611_g25649_i0 PRJNA505329 26120 193 1.423611 2.74756923 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 92.8 4.7e-22   NR MBI4010347.1 3121606 g25649 i0 77.6 0.901554404145078 58 13 90.2 0 15 188 3 60 MBI4010347.1 50S ribosomal protein L24 [Candidatus Aenigmatarchaeota archaeon] diamond 174 92.8 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;