contig_metadata
14 rows where bioproject = "PRJNA505329" and tax_phylum = "Mycoplasmatota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 483187 | 483187 | PRJNA505329_P_NODE_17621_length_219_cov_6.511765_g17150_i0 | PRJNA505329 | 17621 | 219 | 6.511765 | 14.26076535 | Ureaplasma sp. | 1965234 | Bacteria | Bacteria | 394 | 2.79e-105 | NTclustered | gi|2624684045|gb|OR879216.1| | 1965234 | g17150 | i0 | 99.537 | 94.0502283105023 | 216 | 1 | 99 | 0 | 1 | 216 | 1376 | 1161 | Ureaplasma sp. strain 2674 16S ribosomal RNA gene, partial sequence | blastn | 20597 | 394 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma sp. | |||
| 1110399 | 1110399 | PRJNA505329_P_NODE_44681_length_166_cov_5.735043_g44210_i0 | PRJNA505329 | 44681 | 166 | 5.735043 | 9.52017138 | Mollicutes | 31969 | Bacteria | Bacteria | 302 | 1.2500000000000001e-77 | NTclustered | gi|281186773|gb|GU227378.1| | 2100 | g44210 | i0 | 100 | 99.2048192771084 | 163 | 0 | 98 | 0 | 3 | 165 | 1186 | 1024 | Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence | blastn | 16468 | 302 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 7488380 | 7488380 | PRJNA505329_P_NODE_26206_length_192_cov_3.573427_g25735_i0 | PRJNA505329 | 26206 | 192 | 3.573427 | 6.86097984 | Acholeplasma | 2147 | Bacteria | Bacteria | 100 | 5.82e-17 | NTclustered | gi|294768449|gb|GU905034.1| | 264634 | g25735 | i0 | 82.051 | 13.6614583333333 | 117 | 21 | 61 | 0 | 71 | 187 | 1157 | 1273 | Acholeplasma equifetale strain ATCC 29724 23S ribosomal RNA gene, partial sequence; 23S-5S ribosomal RNA intergenic spacer, complete sequence; and 5S ribosomal RNA gene, partial sequence | blastn | 2623 | 100 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Acholeplasma | Acholeplasma equifetale | ||
| 7488467 | 7488467 | PRJNA505329_P_NODE_40726_length_171_cov_1.303279_g40255_i0 | PRJNA505329 | 40726 | 171 | 1.303279 | 2.22860709 | Bacillati | 1783272 | Bacteria | Bacteria | 305 | 9.96e-79 | NTclustered | gi|2668342370|gb|CP143577.1| | 2094 | g40255 | i0 | 99.405 | 103.847953216374 | 168 | 1 | 98 | 0 | 1 | 168 | 374454 | 374621 | Mycoplasmopsis arginini strain NCTC 10129 chromosome, complete genome | blastn | 17758 | 305 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mycoplasmopsis | Mycoplasmopsis arginini | |||
| 13237546 | 13237546 | PRJNA505329_P_NODE_7091_length_275_cov_4.030973_g6620_i0 | PRJNA505329 | 7091 | 275 | 4.030973 | 11.08517575 | Ureaplasma felinum | 42095 | Bacteria | Bacteria | 307 | 4.89e-79 | NTclustered | gi|306410980|gb|HM197716.1| | 42095 | g6620 | i0 | 85.664 | 89.1927272727273 | 286 | 27 | 99 | 7 | 4 | 275 | 3755 | 4040 | Ureaplasma felinum strain ATCC 49229 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 24528 | 307 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma felinum | |||
| 13864022 | 13864022 | PRJNA505329_P_NODE_21011_length_201_cov_3.342105_g20540_i0 | PRJNA505329 | 21011 | 201 | 3.342105 | 6.71763105 | Bacteria | 2 | Bacteria | Bacteria | 95.3 | 2.86e-15 | NTclustered | gi|2209672355|gb|ON023780.1| | 2124 | g20540 | i0 | 90.278 | 6.15422885572139 | 72 | 7 | 36 | 0 | 30 | 101 | 1440 | 1369 | Metamycoplasma salivarium strain ATCC 14277 23S ribosomal RNA gene, partial sequence | blastn | 1237 | 95.3 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Metamycoplasma | Metamycoplasma salivarium | |||
| 15786125 | 15786125 | PRJNA505329_P_NODE_35073_length_179_cov_3.030769_g34602_i0 | PRJNA505329 | 35073 | 179 | 3.030769 | 5.42507651 | Ureaplasma diversum | 42094 | Bacteria | Bacteria | 244 | 2.33e-60 | NTclustered | gi|764071633|gb|CP009770.1| | 42094 | g34602 | i0 | 92.045 | 99.3072625698324 | 176 | 11 | 98 | 3 | 1 | 176 | 141468 | 141296 | Ureaplasma diversum strain ATCC 49782 genome | blastn | 17776 | 244 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma diversum | |||
| 16412928 | 16412928 | PRJNA505329_P_NODE_18813_length_205_cov_1.294872_g18342_i0 | PRJNA505329 | 18813 | 205 | 1.294872 | 2.6544876 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 372 | 1.21e-98 | NTclustered | gi|1958638505|gb|MW498314.1| | 2100 | g18342 | i0 | 100 | 102.882926829268 | 201 | 0 | 98 | 0 | 1 | 201 | 1686 | 1486 | Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence | blastn | 21091 | 372 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 17688239 | 17688239 | PRJNA505329_P_NODE_41814_length_169_cov_1.708333_g41343_i0 | PRJNA505329 | 41814 | 169 | 1.708333 | 2.88708277 | Mycoplasmopsis | 2767358 | Bacteria | Bacteria | 302 | 1.27e-77 | NTclustered | gi|2496025365|gb|CP123300.1| | 28903 | g41343 | i0 | 99.398 | 185.615384615385 | 166 | 1 | 98 | 0 | 4 | 169 | 483203 | 483038 | Mycoplasmopsis bovis strain 15DD0238 chromosome, complete genome | blastn | 31369 | 302 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mycoplasmopsis | Mycoplasmopsis bovis | |||
| 17688241 | 17688241 | PRJNA505329_P_NODE_4234_length_392_cov_4.504373_g3769_i0 | PRJNA505329 | 4234 | 392 | 4.504373 | 17.65714216 | Ureaplasma | 2129 | Bacteria | Bacteria | 688 | 0 | NTclustered | gi|2177595200|gb|CP086123.1| | 2130 | g3769 | i0 | 98.462 | 150.219387755102 | 390 | 6 | 99 | 0 | 3 | 392 | 345449 | 345838 | Ureaplasma urealyticum strain MIN-201 chromosome, complete genome | blastn | 58886 | 688 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma urealyticum | |||
| 18335309 | 18335309 | PRJNA505329_P_NODE_52295_length_153_cov_2.961538_g51824_i0 | PRJNA505329 | 52295 | 153 | 2.961538 | 4.53115314 | Mycoplasmopsis arginini | 2094 | Bacteria | Bacteria | 272 | 8.84e-69 | NTclustered | gi|2668342370|gb|CP143577.1| | 2094 | g51824 | i0 | 99.338 | 83.8888888888889 | 151 | 0 | 98 | 1 | 1 | 150 | 5629 | 5479 | Mycoplasmopsis arginini strain NCTC 10129 chromosome, complete genome | blastn | 12835 | 272 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mycoplasmopsis | Mycoplasmopsis arginini | |||
| 18961853 | 18961853 | PRJNA505329_P_NODE_18335_length_210_cov_1.919255_g17864_i0 | PRJNA505329 | 18335 | 210 | 1.919255 | 4.0304355 | Mollicutes | 31969 | Bacteria | Bacteria | 292 | 9.97e-75 | NTclustered | gi|1563681465|emb|LR214949.1| | 2100 | g17864 | i0 | 96.111 | 89.1095238095238 | 180 | 5 | 85 | 2 | 4 | 182 | 19698 | 19520 | Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 | blastn | 18713 | 292 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 24062411 | 24062411 | PRJNA505329_P_NODE_839_length_1353_cov_8.873466_g644_i0 | PRJNA505329 | 839 | 1353 | 8.873466 | 120.05799498 | Ureaplasma | 2129 | Bacteria | Bacteria | 1687 | 0 | NTclustered | gi|306410979|gb|HM197715.1| | 42093 | g644 | i0 | 89.325 | 113.736141906874 | 1349 | 131 | 99 | 13 | 10 | 1350 | 3241 | 1898 | Ureaplasma cati strain ATCC 49228 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 153885 | 1694 | 0.995867768595041 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma cati | |||
| 25336642 | 25336642 | PRJNA505329_P_NODE_17480_length_221_cov_3.686047_g17009_i0 | PRJNA505329 | 17480 | 221 | 3.686047 | 8.14616387 | FCB group | 1783270 | Bacteria | Bacteria | 215 | 2.36e-51 | NTclustered | gi|523500278|gb|KC686357.1| | 2100 | g17009 | i0 | 100 | 85.2217194570136 | 116 | 0 | 52 | 0 | 103 | 218 | 81 | 196 | Mycoplasma hyorhinis isolate 92Mhyor 16S ribosomal RNA gene, partial sequence | blastn | 18834 | 215 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;