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contig_metadata

14 rows where bioproject = "PRJNA505329" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA505329 · 14 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
483295 483295 PRJNA505329_P_NODE_26321_length_192_cov_2.853147_g25850_i0 PRJNA505329 26321 192 2.853147 5.47804224 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 135 1.6e-27   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g25850 i0 79.798 3.09895833333333 198 30 98 6 1 189 4005 4201 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 595 135 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
1110288 1110288 PRJNA505329_P_NODE_26121_length_193_cov_1.423611_g25650_i0 PRJNA505329 26121 193 1.423611 2.74756923 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 342 8.819999999999999e-90   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g25650 i0 99.468 25.4559585492228 188 1 97 0 4 191 222 409 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 4913 342 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
1110348 1110348 PRJNA505329_P_NODE_3541_length_455_cov_6.581281_g3086_i0 PRJNA505329 3541 455 6.581281 29.94482855 Naegleria 5761 Heterolobosea other_Eukaryota 835 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g3086 i0 100 97.8615384615385 452 0 99 0 1 452 1763 1312 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 44527 835 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
4310374 4310374 PRJNA505329_P_NODE_3684_length_440_cov_9.086957_g3225_i0 PRJNA505329 3684 440 9.086957 39.9826108 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 800 0   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g3225 i0 99.771 35.6090909090909 436 1 99 0 1 436 2765 2330 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 15668 800 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
4310392 4310392 PRJNA505329_P_NODE_38344_length_174_cov_2.960000_g37873_i0 PRJNA505329 38344 174 2.96 5.1504 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 172 1.08e-38   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g37873 i0 96.19 56.4885057471264 105 4 60 0 67 171 3979 3875 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9829 172 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
6213873 6213873 PRJNA505329_P_NODE_445_length_1917_cov_1014.732334_g342_i0 PRJNA505329 445 1917 1014.732334 19452.41884278 Naegleria 5761 Heterolobosea other_Eukaryota 2577 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g342 i0 99.231 68.5863328116849 1431 6 74 1 490 1915 3019 4449 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 131480 2584 0.997291021671827 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8136362 8136362 PRJNA505329_P_NODE_18587_length_207_cov_2.575949_g18116_i0 PRJNA505329 18587 207 2.575949 5.33221443 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 97.1 8.25e-16   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g18116 i0 100 6.9951690821256 52 0 25 0 4 55 3688 3739 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1448 97.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
8136700 8136700 PRJNA505329_P_NODE_48307_length_163_cov_1.815789_g47836_i0 PRJNA505329 48307 163 1.815789 2.95973607 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 217 4.5499999999999996e-52   NTclustered gi|2233316042|emb|OW569396.1| 166959 g47836 i0 92.208 80.1104294478528 154 11 94 1 5 157 20894 21047 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 13058 217 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
13864142 13864142 PRJNA505329_P_NODE_40271_length_171_cov_2.893443_g39800_i0 PRJNA505329 40271 171 2.893443 4.94778753 Naegleria 5761 Heterolobosea other_Eukaryota 309 7.7e-80   NTclustered gi|2618963742|gb|OR769034.1| 5762 g39800 i0 99.412 10.1812865497076 170 1 99 0 1 170 5748 5579 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1741 309 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15138375 15138375 PRJNA505329_P_NODE_35052_length_179_cov_3.146154_g34581_i0 PRJNA505329 35052 179 3.146154 5.63161566 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 322 1.05e-83   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g34581 i0 99.435 66.586592178771 177 1 99 0 1 177 1901 1725 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 11919 322 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
17060784 17060784 PRJNA505329_P_NODE_36134_length_178_cov_1.589147_g35663_i0 PRJNA505329 36134 178 1.589147 2.82868166 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 287 3.79e-73   NTclustered gi|2031946985|emb|OD958550.1| 5763 g35663 i0 96.532 30.6123595505618 173 6 97 0 1 173 4210 4382 Naegleria fowleri Karachi_NF001 strain blastn 5449 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
17688271 17688271 PRJNA505329_P_NODE_49154_length_162_cov_4.486726_g48683_i0 PRJNA505329 49154 162 4.486726 7.26849612 Vahlkampfia 5770 Heterolobosea other_Eukaryota 291 2.62e-74   NTclustered gi|1860218302|gb|MT648420.1| 74082 g48683 i0 100 21.1111111111111 157 0 97 0 3 159 166 10 Vahlkampfia avara isolate NP10 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3420 291 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
23436074 23436074 PRJNA505329_P_NODE_52699_length_150_cov_5.069307_g52228_i0 PRJNA505329 52699 150 5.069307 7.6039605 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 272 8.609999999999998e-69   NTclustered gi|2283788571|gb|OP179657.1| 74082 g52228 i0 100 86.1133333333333 147 0 98 0 1 147 1069 923 Vahlkampfia avara isolate VA7 small subunit ribosomal RNA gene, partial sequence blastn 12917 272 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
24062220 24062220 PRJNA505329_P_NODE_2519_length_599_cov_4.494545_g2104_i0 PRJNA505329 2519 599 4.494545 26.92232455 Naegleria 5761 Heterolobosea other_Eukaryota 1094 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g2104 i0 100 98.8130217028381 592 0 99 0 4 595 1291 700 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 59189 1094 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;