RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA505329" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA505329 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
483316 483316 PRJNA505329_P_NODE_28741_length_189_cov_1.800000_g28270_i0 PRJNA505329 28741 189 1.8 3.402 Nitzschia reversa 2675857 SAR_Eukaryotes SAR_Eukaryotes 257 3.2e-64   NTclustered gi|2862228864|gb|PQ645498.1| 2675857 g28270 i0 91.579 89.3015873015873 190 11 98 2 2 186 3769 3580 Nitzschia reversa isolate AGSB0348 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16878 257 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia reversa
24709541 24709541 PRJNA505329_P_NODE_49640_length_162_cov_1.814159_g49169_i0 PRJNA505329 49640 162 1.814159 2.93893758 Caloneis lewisii 1003024 SAR_Eukaryotes SAR_Eukaryotes 294 2.03e-75   NTclustered gi|329343409|gb|HQ912580.1| 1003024 g49169 i0 100 97.7222222222222 159 0 98 0 1 159 332 174 Caloneis lewisii strain UTEX FD54 18S small subunit ribosomal RNA gene, partial sequence blastn 15831 294 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Caloneis Caloneis lewisii
31451522 31451522 PRJNA505329_P_NODE_9816_length_234_cov_2.594595_g9345_i0 PRJNA505329 9816 234 2.594595 6.0713523 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 53.1 5.88e-6   NR KAI2513725.1 210448 g9345 i0 78.1 1.64102564102564 32 7 41 0 100 5 70 101 KAI2513725.1 hypothetical protein MHU86_508 [Fragilaria crotonensis] diamond 384 53.1 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
32036975 32036975 PRJNA505329_P_NODE_41678_length_169_cov_2.033333_g41207_i0 PRJNA505329 41678 169 2.033333 3.43633277 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 51.2 1.36e-5   NR KAL3921579.1 3061772 g41207 i0 53.8 2.76923076923077 52 23 90.5 1 164 12 162 213 KAL3921579.1 MAG: hypothetical protein SGILL_002674 [Bacillariaceae sp.] diamond 468 51.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;