RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA505329", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA505329 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20236840 20236840 PRJNA505329_P_NODE_4136_length_400_cov_19.857550_g3671_i0 PRJNA505329 4136 400 19.85755 79.4302 Eukaryota 2759 Fungi Fungi 235 3.55e-57   NTclustered gi|311235603|ref|NG_027618.1| 109760 g3671 i0 88.5 50.445 200 16 49 6 11 207 1929 2124 Spizellomyces punctatus ATCC 48900 28S rRNA gene, partial sequence; from TYPE material blastn 20178 237 0.991561181434599 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
24062229 24062229 PRJNA505329_P_NODE_26239_length_192_cov_3.433566_g25768_i0 PRJNA505329 26239 192 3.433566 6.59244672 Polychytrium 110092 Fungi Fungi 257 3.26e-64   NTclustered gi|386165152|gb|HQ901772.1| 1134073 g25768 i0 91.935 97.0729166666667 186 11 96 4 5 189 924 742 Cf. Polychytrium sp. JEL605 18S small subunit ribosomal RNA gene, partial sequence blastn 18638 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium cf. Polychytrium sp. JEL605

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;