RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA505329", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA505329 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8763432 8763432 PRJNA505329_P_NODE_51287_length_158_cov_2.275229_g50816_i0 PRJNA505329 51287 158 2.275229 3.59486182 Bacteria 2 Bacteria Bacteria 285 1.18e-72   NTclustered gi|146429400|gb|EF220216.1| 34034 g50816 i0 100 96.7341772151899 154 0 97 0 2 155 183 30 Uncultured delta proteobacterium clone FB-1_C04 16S ribosomal RNA gene, partial sequence blastn 15284 285 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17060730 17060730 PRJNA505329_P_NODE_31454_length_185_cov_1.522059_g30983_i0 PRJNA505329 31454 185 1.522059 2.81580915 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 139 1.18e-28   NTclustered gi|297181000|gb|GU474857.1| 710824 g30983 i0 84.507 97.9783783783784 142 21 76 1 16 156 8951 9092 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 18126 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02
17060811 17060811 PRJNA505329_P_NODE_39154_length_173_cov_2.088710_g38683_i0 PRJNA505329 39154 173 2.08871 3.6134683 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 159 8.319999999999998e-35   NTclustered gi|297180392|gb|GU474842.1| 710820 g38683 i0 85.526 125.208092485549 152 22 88 0 8 159 12864 12713 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 21661 159 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;