RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA505329", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA505329 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
483358 483358 PRJNA505329_P_NODE_32721_length_183_cov_2.276119_g32250_i0 PRJNA505329 32721 183 2.276119 4.16529777 Macrostomum sp. CEL-2014 1468207 Platyhelminthes Platyhelminthes 309 8.38e-80   NTclustered gi|588313885|gb|KC869843.1| 1468207 g32250 i0 97.253 93.9071038251366 182 5 99 0 1 182 2727 2908 Macrostomum sp. CEL-2014 28S ribosomal RNA gene, partial sequence blastn 17185 309 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum sp. CEL-2014
8136686 8136686 PRJNA505329_P_NODE_47387_length_164_cov_1.782609_g46916_i0 PRJNA505329 47387 164 1.782609 2.92347876 Macrostomum poznaniense 2614303 Platyhelminthes Platyhelminthes 283 4.46e-72   NTclustered gi|1837893560|gb|MT429061.1| 2614303 g46916 i0 98.16 99.8658536585366 163 1 98 1 4 164 591 753 Macrostomum poznaniense voucher MTP_LS_2365 large subunit ribosomal RNA gene, partial sequence blastn 16378 283 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum poznaniense
11962330 11962330 PRJNA505329_P_NODE_46970_length_164_cov_3.513043_g46499_i0 PRJNA505329 46970 164 3.513043 5.76139052 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 296 5.73e-76   NTclustered gi|1373865304|ref|XM_024499029.1| 6210 g46499 i0 100 103.44512195122 160 0 98 0 4 163 736 577 Echinococcus granulosus rRNA promoter binding protein (EGR_09780), partial mRNA blastn 16965 296 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
24709364 24709364 PRJNA505329_P_NODE_34200_length_181_cov_1.553030_g33729_i0 PRJNA505329 34200 181 1.55303 2.8109843 Arthurdendyus triangulatus 132421 Platyhelminthes Platyhelminthes 279 6.48e-71   NTclustered gi|2620230845|gb|OR797296.1| 132421 g33729 i0 94.475 3 181 10 100 0 1 181 5902 6082 Arthurdendyus triangulatus small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 543 279 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Arthurdendyus Arthurdendyus triangulatus
26633866 26633866 PRJNA505329_P_NODE_11681_length_233_cov_3.331522_g11210_i0 PRJNA505329 11681 233 3.331522 7.76244626 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 60.8 4.71e-10   NR AAX30336.2 6182 g11210 i0 82.9 0.450643776824034 35 3 41.2 1 3 98 10 44 AAX30336.2 SJCHGC03028 protein, partial [Schistosoma japonicum] diamond 105 60.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;