RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA505329", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA505329 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20885626 20885626 PRJNA505329_P_NODE_48517_length_163_cov_1.798246_g48046_i0 PRJNA505329 48517 163 1.798246 2.93114098 Mytilus californianus 6549 Mollusca Mollusca 52.8 0.014   NTclustered gi|2334618865|ref|XM_052246129.1| 6549 g48046 i0 100 0.515337423312883 28 0 17 0 46 73 1936 1909 PREDICTED: Mytilus californianus rho-associated protein kinase 1-like (LOC127735797), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
31214071 31214071 PRJNA505329_P_NODE_11255_length_233_cov_3.559783_g10784_i0 PRJNA505329 11255 233 3.559783 8.29429439 Mya arenaria 6604 Mollusca Mollusca 46.2 0.00199   NR WAR13570.1 6604 g10784 i0 65.6 4.48068669527897 32 11 41.2 0 2 97 851 882 WAR13570.1 hypothetical protein MAR_027750 [Mya arenaria] diamond 1044 46.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
31514903 31514903 PRJNA505329_P_NODE_33616_length_182_cov_1.421053_g33145_i0 PRJNA505329 33616 182 1.421053 2.58631646 Opisthokonta 33154 Mollusca Mollusca 65.9 1.16e-10   NR XP_063400645.1 6551 g33145 i0 96.7 15.8241758241758 30 1 49.5 0 92 3 403 432 XP_063400645.1 DNA helicase MCM9-like [Mytilus trossulus] diamond 2880 66.2 0.995468277945619 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;