RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA505329", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA505329 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3661479 3661479 PRJNA505329_P_NODE_21183_length_201_cov_3.263158_g20712_i0 PRJNA505329 21183 201 3.263158 6.55894758 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 316 5.61e-82   NTclustered gi|959096823|gb|KT878668.1| 2903 g20712 i0 95.567 100.601990049751 203 0 97 1 4 197 180 382 Emiliania huxleyi strain RCC362 18S ribosomal RNA gene, partial sequence blastn 20221 316 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
31531028 31531028 PRJNA505329_P_NODE_13136_length_233_cov_2.945652_g12665_i0 PRJNA505329 13136 233 2.945652 6.86336916 Prymnesium parvum 97485 Haptophyta other_Eukaryota 49.7 1.12e-4   NR KAL1524378.1 97485 g12665 i0 60.6 0.849785407725322 33 13 42.5 0 230 132 149 181 KAL1524378.1 hypothetical protein AB1Y20_019274 [Prymnesium parvum] diamond 198 49.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;