RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA498309", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 26 ✖

tax_phylum 1

  • Thermoproteota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8135068 8135068 PRJNA498309_S_NODE_20287_length_451_cov_11.425481_g18178_i0 PRJNA498309 20287 451 11.425481 51.52891931 Pyrobaculum aerophilum 13773 Archaea Archaea 750 0   NTclustered gi|18308975|gb|AE009441.1| 178306 g18178 i0 100 0.900221729490022 406 0 90 0 24 429 1078415 1078820 Pyrobaculum aerophilum str. IM2, complete genome blastn 406 750 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
10037887 10037887 PRJNA498309_S_NODE_13648_length_632_cov_137.234506_g11727_i0 PRJNA498309 13648 632 137.234506 867.32207792 Thermoproteati 1783275 Archaea Archaea 787 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g11727 i0 90.099 41.8860759493671 606 60 96 0 1 606 40831 41436 Uncultured crenarchaeote genomic fragment 54d9 blastn 26472 791 0.994943109987358 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
14509187 14509187 PRJNA498309_P_NODE_22912_length_604_cov_11.608466_g21024_i0 PRJNA498309 22912 604 11.608466 70.11513464 Thermoproteota archaeon 2056631 Archaea Archaea 267 5.41e-84   NR MEM3368575.1 2056631 g21024 i0 92.1 0.695364238410596 140 10 69 1 598 182 356 495 MEM3368575.1 hypothetical protein [Thermoproteota archaeon] diamond 420 267 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
15782696 15782696 PRJNA498309_P_NODE_10873_length_913_cov_3.133562_g9414_i0 PRJNA498309 10873 913 3.133562 28.60942106 Thermoproteota archaeon 2056631 Archaea Archaea 307 1.82e-102   NR MEM3369232.1 2056631 g9414 i0 99.4 0.522453450164294 159 1 52.2 0 417 893 19 177 MEM3369232.1 hypothetical protein [Thermoproteota archaeon] diamond 477 307 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
16412245 16412245 PRJNA498309_S_NODE_31013_length_289_cov_4.149606_g28845_i0 PRJNA498309 31013 289 4.149606 11.99236134 Thermoproteati 1783275 Archaea Archaea 267 8.77e-67   NTclustered gi|42557759|emb|AJ627422.1| 29281 g28845 i0 83.448 62.6712802768166 290 44 100 4 1 289 40553 40839 Uncultured crenarchaeote genomic fragment 54d9 blastn 18112 267 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
18332421 18332421 PRJNA498309_P_NODE_42635_length_420_cov_1.610966_g40518_i0 PRJNA498309 42635 420 1.610966 6.7660572 Pyrobaculum aerophilum 13773 Archaea Archaea 737 0   NTclustered gi|18308975|gb|AE009441.1| 178306 g40518 i0 100 0.95 399 0 95 0 1 399 1078813 1078415 Pyrobaculum aerophilum str. IM2, complete genome blastn 399 737 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
23433537 23433537 PRJNA498309_P_NODE_61619_length_320_cov_6.512367_g59471_i0 PRJNA498309 61619 320 6.512367 20.8395744 Thermoproteota archaeon 2056631 Archaea Archaea 191 1.81e-57   NR MEM3368576.1 2056631 g59471 i0 96 0.928125 99 4 92.8 0 315 19 1 99 MEM3368576.1 hypothetical protein [Thermoproteota archaeon] diamond 297 191 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
26665283 26665283 PRJNA498309_P_NODE_52261_length_364_cov_11.951070_g50113_i0 PRJNA498309 52261 364 11.95107 43.5018948 Thermoproteota archaeon 2056631 Archaea Archaea 134 3.22e-37   NR MEM3368590.1 2056631 g50113 i0 88 0.618131868131868 75 9 61.8 0 1 225 53 127 MEM3368590.1 N-acetylmuramoyl-L-alanine amidase [Thermoproteota archaeon] diamond 225 134 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
26760437 26760437 PRJNA498309_P_NODE_86441_length_230_cov_2.984456_g84292_i0 PRJNA498309 86441 230 2.984456 6.8642488 Thermoproteota archaeon 2056631 Archaea Archaea 85.1 3.75e-17   NR MEM3368511.1 2056631 g84292 i0 90.7 0.560869565217391 43 4 56.1 0 62 190 469 511 MEM3368511.1 hypothetical protein [Thermoproteota archaeon] diamond 129 85.1 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
26887415 26887415 PRJNA498309_P_NODE_69901_length_286_cov_2.457831_g67752_i0 PRJNA498309 69901 286 2.457831 7.02939666 Thermoproteota archaeon 2056631 Archaea Archaea 127 1.99e-33   NR MEM3368607.1 2056631 g67752 i0 71.4 0.954545454545455 91 26 95.5 0 3 275 209 299 MEM3368607.1 hypothetical protein [Thermoproteota archaeon] diamond 273 127 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27013673 27013673 PRJNA498309_P_NODE_120462_length_154_cov_2.000000_g118313_i0 PRJNA498309 120462 154 2 3.08 Thermoproteota archaeon 2056631 Archaea Archaea 87.8 9.71e-20   NR MEM3368515.1 2056631 g118313 i0 91.3 0.896103896103896 46 4 89.6 0 140 3 89 134 MEM3368515.1 hypothetical protein [Thermoproteota archaeon] diamond 138 87.8 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27298327 27298327 PRJNA498309_P_NODE_41403_length_427_cov_12.566667_g39290_i0 PRJNA498309 41403 427 12.566667 53.65966809 Thermoproteota archaeon 2056631 Archaea Archaea 129 9.349999999999999e-35   NR MEM3368590.1 2056631 g39290 i0 89.9 0.484777517564403 69 7 48.5 0 82 288 59 127 MEM3368590.1 N-acetylmuramoyl-L-alanine amidase [Thermoproteota archaeon] diamond 207 129 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27866595 27866595 PRJNA498309_P_NODE_79345_length_252_cov_7.795349_g77196_i0 PRJNA498309 79345 252 7.795349 19.64427948 Thermoproteota archaeon 2056631 Archaea Archaea 95.1 1.56e-20   NR MEM3368556.1 2056631 g77196 i0 83.6 0.654761904761905 55 9 65.5 0 5 169 1410 1464 MEM3368556.1 hypothetical protein [Thermoproteota archaeon] diamond 165 95.1 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27961454 27961454 PRJNA498309_P_NODE_99405_length_195_cov_2.962025_g97256_i0 PRJNA498309 99405 195 2.962025 5.77594875 Thermoproteota archaeon 2056631 Archaea Archaea 88.2 1.85e-18   NR MEM3368555.1 2056631 g97256 i0 82.5 0.876923076923077 57 10 87.7 0 171 1 38 94 MEM3368555.1 hypothetical protein [Thermoproteota archaeon] diamond 171 88.2 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28213794 28213794 PRJNA498309_P_NODE_97886_length_199_cov_2.253086_g95737_i0 PRJNA498309 97886 199 2.253086 4.48364114 Thermoproteota archaeon 2056631 Archaea Archaea 42 0.0402   NR MEM3368524.1 2056631 g95737 i0 76.9 0.391959798994975 26 6 39.2 0 61 138 1 26 MEM3368524.1 hypothetical protein [Thermoproteota archaeon] diamond 78 42 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29145495 29145495 PRJNA498309_P_NODE_68009_length_293_cov_5.250000_g65860_i0 PRJNA498309 68009 293 5.25 15.3825 root 1 Root_unresolved Root_unresolved 102 1.86e-23   NR WP_345803936.1 121277 g65860 i0 80.9 1.60750853242321 68 13 69.6 0 289 86 167 234 WP_345803936.1 complex I subunit 5 family protein [Pyrobaculum arsenaticum] diamond 471 103 0.990291262135922 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum
29476670 29476670 PRJNA498309_P_NODE_77710_length_258_cov_2.113122_g75561_i0 PRJNA498309 77710 258 2.113122 5.45185476 Thermoproteota archaeon 2056631 Archaea Archaea 153 6.889999999999998e-41   NR MEM3368643.1 2056631 g75561 i0 91.7 0.976744186046512 84 7 97.7 0 6 257 324 407 MEM3368643.1 hypothetical protein [Thermoproteota archaeon] diamond 252 153 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29919210 29919210 PRJNA498309_P_NODE_47171_length_392_cov_2.501408_g45035_i0 PRJNA498309 47171 392 2.501408 9.80551936 Thermoproteota archaeon 2056631 Archaea Archaea 194 1.37e-54   NR MEM3368643.1 2056631 g45035 i0 96 0.772959183673469 101 4 77.3 0 88 390 699 799 MEM3368643.1 hypothetical protein [Thermoproteota archaeon] diamond 303 194 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30835306 30835306 PRJNA498309_P_NODE_90354_length_219_cov_1.252747_g88205_i0 PRJNA498309 90354 219 1.252747 2.74351593 Thermoproteota archaeon 2056631 Archaea Archaea 100 3.61e-23   NR NLE04249.1 2056631 g88205 i0 74.2 1.80821917808219 66 17 90.4 0 219 22 154 219 NLE04249.1 Fe-S-oxidoreductase [Thermoproteota archaeon] diamond 396 100 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30866864 30866864 PRJNA498309_P_NODE_86134_length_231_cov_2.644330_g83985_i0 PRJNA498309 86134 231 2.64433 6.1084023 Thermoproteota archaeon 2056631 Archaea Archaea 115 3.57e-30   NR MEM3368514.1 2056631 g83985 i0 82.9 0.909090909090909 70 12 90.9 0 210 1 140 209 MEM3368514.1 hypothetical protein [Thermoproteota archaeon] diamond 210 115 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31056792 31056792 PRJNA498309_P_NODE_100055_length_194_cov_1.484076_g97906_i0 PRJNA498309 100055 194 1.484076 2.87910744 Thermoproteota archaeon 2056631 Archaea Archaea 125 4.7299999999999997e-32   NR MEM3368575.1 2056631 g97906 i0 93.8 0.989690721649485 64 4 99 0 3 194 49 112 MEM3368575.1 hypothetical protein [Thermoproteota archaeon] diamond 192 125 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31056800 31056800 PRJNA498309_P_NODE_15475_length_749_cov_4.669944_g13820_i0 PRJNA498309 15475 749 4.669944 34.97788056 Thermoproteota archaeon 2056631 Archaea Archaea 356 2.21e-112   NR MEM3368643.1 2056631 g13820 i0 92.6 0.865153538050734 216 16 86.5 0 648 1 441 656 MEM3368643.1 hypothetical protein [Thermoproteota archaeon] diamond 648 356 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31119405 31119405 PRJNA498309_P_NODE_74195_length_270_cov_4.643777_g72046_i0 PRJNA498309 74195 270 4.643777 12.5381979 Thermoproteota archaeon 2056631 Archaea Archaea 156 7.05e-47   NR MEM3368608.1 2056631 g72046 i0 92.8 0.922222222222222 83 6 92.2 0 22 270 29 111 MEM3368608.1 hypothetical protein [Thermoproteota archaeon] diamond 249 156 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31404404 31404404 PRJNA498309_P_NODE_96176_length_203_cov_3.728916_g94027_i0 PRJNA498309 96176 203 3.728916 7.56969948 Thermoproteota archaeon 2056631 Archaea Archaea 71.6 1.45e-12   NR MEM3368556.1 2056631 g94027 i0 94.4 0.532019704433498 36 2 53.2 0 180 73 1288 1323 MEM3368556.1 hypothetical protein [Thermoproteota archaeon] diamond 108 71.6 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32416731 32416731 PRJNA498309_P_NODE_85799_length_232_cov_2.466667_g83650_i0 PRJNA498309 85799 232 2.466667 5.72266744 Thermoproteota archaeon 2056631 Archaea Archaea 126 5.68e-33   NR MEM3368576.1 2056631 g83650 i0 86.7 0.969827586206897 75 10 97 0 4 228 209 283 MEM3368576.1 hypothetical protein [Thermoproteota archaeon] diamond 225 126 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32448509 32448509 PRJNA498309_P_NODE_94079_length_208_cov_11.409357_g91930_i0 PRJNA498309 94079 208 11.409357 23.73146256 Pyrobaculum arsenaticum 121277 Archaea Archaea 124 1.12e-31   NR WP_345803937.1 121277 g91930 i0 100 0.908653846153846 63 0 90.9 0 1 189 92 154 WP_345803937.1 proton-conducting transporter membrane subunit [Pyrobaculum arsenaticum] diamond 189 124 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;