RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA498309" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA498309 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9410399 9410399 PRJNA498309_S_NODE_36948_length_233_cov_42.141414_g34780_i0 PRJNA498309 36948 233 42.141414 98.18949462 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 132 2.6e-26   NTclustered gi|690647901|emb|LN195382.1| 99802 g34780 i0 89.524 0.450643776824034 105 10 45 1 129 232 1 105 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei, scaffold SPER_scaffold0167598 blastn 105 132 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
11958772 11958772 PRJNA498309_P_NODE_106070_length_180_cov_71.013986_g103921_i0 PRJNA498309 106070 180 71.013986 127.8251748 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 294 2.3e-75   NTclustered gi|690911020|emb|LN418807.1| 99802 g103921 i0 96.629 0.988888888888889 178 4 98 2 1 177 162 338 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei, scaffold SPER_contig0170473 blastn 178 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
29035174 29035174 PRJNA498309_P_NODE_72248_length_277_cov_3.087500_g70099_i0 PRJNA498309 72248 277 3.0875 8.552375 Cichlidogyrus casuarinus 1844966 Platyhelminthes Platyhelminthes 43.1 0.0397   NR KAL3309369.1 1844966 g70099 i0 47.2 0.389891696750903 36 19 39 0 240 133 236 271 KAL3309369.1 hypothetical protein Ciccas_012085, partial [Cichlidogyrus casuarinus] diamond 108 43.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Dactylogyridea Ancyrocephalidae Cichlidogyrus Cichlidogyrus casuarinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;