RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA498309", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA498309 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5584700 5584700 PRJNA498309_P_NODE_60245_length_326_cov_9.737024_g58097_i0 PRJNA498309 60245 326 9.737024 31.74269824 Orthotospovirus tomatomaculae 3052585 Viruses Viruses 544 4.15e-150   NTclustered gi|2719906158|gb|PP632106.1| 3052585 g58097 i0 98.701 94.4723926380368 308 1 94 1 1 305 1551 1244 Orthotospovirus tomatomaculae isolate Tom-CA segment S, complete sequence blastn 30798 544 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Tospoviridae Orthotospovirus Orthotospovirus tomatomaculae
17687157 17687157 PRJNA498309_S_NODE_11474_length_727_cov_3.702312_g9634_i0 PRJNA498309 11474 727 3.702312 26.91580824 Influenza A virus 11320 Viruses Viruses 160 5.3799999999999996e-42   NR WFF60554.1 11320 g9634 i0 61.8 0.647867950481431 157 19 47.9 2 598 251 300 456 WFF60554.1 hemagglutinin [Influenza A virus] diamond 471 160 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;